STRINGSTRING
LOC108228999 LOC108228999 TNNC1 TNNC1 LOC108231684 LOC108231684 med1 med1 LOC108235179 LOC108235179 SMAD4 SMAD4 mstn mstn zfpm2 zfpm2 HAND1 HAND1 LOC108250355 LOC108250355 ednra ednra LOC108249163 LOC108249163 LOC108228916 LOC108228916 nkx2-5 nkx2-5 LOC108247541 LOC108247541
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC108228999Mothers against decapentaplegic homolog. (553 aa)
TNNC1Troponin C type 1a (slow). (175 aa)
LOC108231684Troponin I type 1b (skeletal, slow). (170 aa)
med1Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (1802 aa)
LOC108235179Troponin I type 1a (skeletal, slow). (171 aa)
SMAD4Mothers against decapentaplegic homolog. (457 aa)
mstnMyostatin b. (396 aa)
zfpm2Zinc finger protein, FOG family member 2a. (1170 aa)
HAND1Heart and neural crest derivatives expressed 1. (166 aa)
LOC108250355Uncharacterized protein. (161 aa)
ednraEndothelin receptor type Aa; Belongs to the G-protein coupled receptor 1 family. (426 aa)
LOC108249163Endothelin receptor type Ab; Belongs to the G-protein coupled receptor 1 family. (469 aa)
LOC108228916Transforming growth factor beta; Belongs to the TGF-beta family. (381 aa)
nkx2-5NK2 homeobox 5. (302 aa)
LOC108247541Mothers against decapentaplegic homolog. (503 aa)
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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