STRINGSTRING
xpc xpc ddb1 ddb1 actr5 actr5 mc1r mc1r sirt1 sirt1 xpa xpa ercc1 ercc1 ino80 ino80 pold3 pold3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
xpcXeroderma pigmentosum, complementation group C. (935 aa)
ddb1Damage-specific DNA binding protein 1. (1075 aa)
actr5Actin related protein 5; Belongs to the actin family. (642 aa)
mc1rMelanocyte-stimulating hormone receptor; Receptor for MSH (alpha, beta and gamma) and ACTH. The activity of this receptor is mediated by G proteins which activate adenylate cyclase; Belongs to the G-protein coupled receptor 1 family. (310 aa)
sirt1Sirtuin 1. (693 aa)
xpaXeroderma pigmentosum, complementation group A. (275 aa)
ercc1Excision repair cross-complementation group 1. (352 aa)
ino80INO80 complex ATPase subunit. (1474 aa)
pold3Polymerase (DNA-directed), delta 3, accessory subunit. (440 aa)
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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