16 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	scn3b	Sodium channel, voltage-gated, type III, beta. (218 aa)
	LOC108239292	Calcium voltage-gated channel subunit alpha1 Ia. (1474 aa)
	ENSKMAP00000000801	Ion_trans domain-containing protein. (397 aa)
	LOC108242159	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. (2013 aa)
	LOC108240763	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. (1784 aa)
	LOC108247596	Sodium channel, voltage-gated, type IV, beta b. (212 aa)
	LOC108240485	Sodium channel, voltage-gated, type IV, beta a. (237 aa)
	LOC108240466	Sodium channel, voltage-gated, type II, beta. (220 aa)
	LOC108244585	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. (1758 aa)
	scn4a	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. (1869 aa)
	LOC108229119	Ion_trans domain-containing protein. (215 aa)
	LOC108235708	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. (1961 aa)
	LOC108243229	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. (1729 aa)
	LOC108238657	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. (1728 aa)
	ENSKMAP00000019561	Uncharacterized protein. (503 aa)
	LOC108231691	Calcium voltage-gated channel subunit alpha1 Ib. (2045 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSKMAP00000000801	ENSKMAP00000019561	ENSKMAP00000000801	ENSKMAP00000019561	Ion_trans domain-containing protein.	Uncharacterized protein.	0.428
ENSKMAP00000000801	LOC108239292	ENSKMAP00000000801	ENSKMAP00000000716	Ion_trans domain-containing protein.	Calcium voltage-gated channel subunit alpha1 Ia.	0.457
ENSKMAP00000019561	ENSKMAP00000000801	ENSKMAP00000019561	ENSKMAP00000000801	Uncharacterized protein.	Ion_trans domain-containing protein.	0.428
ENSKMAP00000019561	LOC108229119	ENSKMAP00000019561	ENSKMAP00000017907	Uncharacterized protein.	Ion_trans domain-containing protein.	0.922
ENSKMAP00000019561	LOC108240466	ENSKMAP00000019561	ENSKMAP00000004652	Uncharacterized protein.	Sodium channel, voltage-gated, type II, beta.	0.743
ENSKMAP00000019561	LOC108240485	ENSKMAP00000019561	ENSKMAP00000004638	Uncharacterized protein.	Sodium channel, voltage-gated, type IV, beta a.	0.566
ENSKMAP00000019561	scn3b	ENSKMAP00000019561	ENSKMAP00000012901	Uncharacterized protein.	Sodium channel, voltage-gated, type III, beta.	0.441
LOC108229119	ENSKMAP00000019561	ENSKMAP00000017907	ENSKMAP00000019561	Ion_trans domain-containing protein.	Uncharacterized protein.	0.922
LOC108229119	LOC108240466	ENSKMAP00000017907	ENSKMAP00000004652	Ion_trans domain-containing protein.	Sodium channel, voltage-gated, type II, beta.	0.743
LOC108229119	LOC108240485	ENSKMAP00000017907	ENSKMAP00000004638	Ion_trans domain-containing protein.	Sodium channel, voltage-gated, type IV, beta a.	0.566
LOC108229119	scn3b	ENSKMAP00000017907	ENSKMAP00000012901	Ion_trans domain-containing protein.	Sodium channel, voltage-gated, type III, beta.	0.441
LOC108235708	LOC108240466	ENSKMAP00000024763	ENSKMAP00000004652	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	Sodium channel, voltage-gated, type II, beta.	0.843
LOC108235708	LOC108240485	ENSKMAP00000024763	ENSKMAP00000004638	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	Sodium channel, voltage-gated, type IV, beta a.	0.588
LOC108235708	LOC108243229	ENSKMAP00000024763	ENSKMAP00000025621	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.504
LOC108235708	scn3b	ENSKMAP00000024763	ENSKMAP00000012901	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	Sodium channel, voltage-gated, type III, beta.	0.627
LOC108235708	scn4a	ENSKMAP00000024763	ENSKMAP00000008909	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.505
LOC108238657	LOC108240466	ENSKMAP00000026292	ENSKMAP00000004652	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	Sodium channel, voltage-gated, type II, beta.	0.828
LOC108238657	LOC108240485	ENSKMAP00000026292	ENSKMAP00000004638	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	Sodium channel, voltage-gated, type IV, beta a.	0.566
LOC108238657	LOC108243229	ENSKMAP00000026292	ENSKMAP00000025621	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	0.505
LOC108238657	scn3b	ENSKMAP00000026292	ENSKMAP00000012901	Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.	Sodium channel, voltage-gated, type III, beta.	0.627