15 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108239333	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction. (69 aa)
	LOC108230804	Guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 4. (369 aa)
	LOC108239581	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction. (73 aa)
	gnb1	Guanine nucleotide binding protein (G protein), beta polypeptide 1a. (340 aa)
	LOC108231344	Guanine nucleotide binding protein (G protein), beta polypeptide 1b. (340 aa)
	LOC108247907	Guanine nucleotide binding protein (G protein), gamma 13a. (135 aa)
	LOC108247551	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction. (70 aa)
	LOC108235428	Guanine nucleotide binding protein (G protein), beta polypeptide 3a. (340 aa)
	LOC108247527	Guanine nucleotide binding protein (G protein), gamma 13b. (61 aa)
	GNAZ	G protein subunit alpha z. (355 aa)
	LOC108248275	Guanine nucleotide binding protein (G protein), beta polypeptide 2. (340 aa)
	GNB5	G protein subunit beta 5. (401 aa)
	LOC108242690	Guanine nucleotide binding protein (G protein), beta polypeptide 3b. (342 aa)
	gnb5	Guanine nucleotide binding protein (G protein), beta 5a. (361 aa)
	gnb4	Guanine nucleotide binding protein (G protein), beta polypeptide 4b. (340 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GNAZ	GNB5	ENSKMAP00000013430	ENSKMAP00000022626	G protein subunit alpha z.	G protein subunit beta 5.	0.766
GNAZ	LOC108231344	ENSKMAP00000013430	ENSKMAP00000007850	G protein subunit alpha z.	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	0.688
GNAZ	LOC108235428	ENSKMAP00000013430	ENSKMAP00000011570	G protein subunit alpha z.	Guanine nucleotide binding protein (G protein), beta polypeptide 3a.	0.643
GNAZ	LOC108239581	ENSKMAP00000013430	ENSKMAP00000000969	G protein subunit alpha z.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.769
GNAZ	LOC108242690	ENSKMAP00000013430	ENSKMAP00000026258	G protein subunit alpha z.	Guanine nucleotide binding protein (G protein), beta polypeptide 3b.	0.532
GNAZ	LOC108247527	ENSKMAP00000013430	ENSKMAP00000012087	G protein subunit alpha z.	Guanine nucleotide binding protein (G protein), gamma 13b.	0.723
GNAZ	LOC108247551	ENSKMAP00000013430	ENSKMAP00000010308	G protein subunit alpha z.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.751
GNAZ	LOC108248275	ENSKMAP00000013430	ENSKMAP00000019044	G protein subunit alpha z.	Guanine nucleotide binding protein (G protein), beta polypeptide 2.	0.688
GNAZ	gnb1	ENSKMAP00000013430	ENSKMAP00000004813	G protein subunit alpha z.	Guanine nucleotide binding protein (G protein), beta polypeptide 1a.	0.688
GNAZ	gnb4	ENSKMAP00000013430	ENSKMAP00000029769	G protein subunit alpha z.	Guanine nucleotide binding protein (G protein), beta polypeptide 4b.	0.688
GNAZ	gnb5	ENSKMAP00000013430	ENSKMAP00000029224	G protein subunit alpha z.	Guanine nucleotide binding protein (G protein), beta 5a.	0.766
GNB5	GNAZ	ENSKMAP00000022626	ENSKMAP00000013430	G protein subunit beta 5.	G protein subunit alpha z.	0.766
GNB5	LOC108230804	ENSKMAP00000022626	ENSKMAP00000000161	G protein subunit beta 5.	Guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 4.	0.702
GNB5	LOC108231344	ENSKMAP00000022626	ENSKMAP00000007850	G protein subunit beta 5.	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	0.409
GNB5	LOC108239333	ENSKMAP00000022626	ENSKMAP00000000179	G protein subunit beta 5.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.452
GNB5	LOC108239581	ENSKMAP00000022626	ENSKMAP00000000969	G protein subunit beta 5.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.820
GNB5	LOC108247527	ENSKMAP00000022626	ENSKMAP00000012087	G protein subunit beta 5.	Guanine nucleotide binding protein (G protein), gamma 13b.	0.783
GNB5	LOC108247551	ENSKMAP00000022626	ENSKMAP00000010308	G protein subunit beta 5.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.774
GNB5	LOC108247907	ENSKMAP00000022626	ENSKMAP00000009673	G protein subunit beta 5.	Guanine nucleotide binding protein (G protein), gamma 13a.	0.590
GNB5	LOC108248275	ENSKMAP00000022626	ENSKMAP00000019044	G protein subunit beta 5.	Guanine nucleotide binding protein (G protein), beta polypeptide 2.	0.401