63 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108239717	Polymerase (RNA) II (DNA directed) polypeptide K. (58 aa)
	polr2c	Polymerase (RNA) II (DNA directed) polypeptide C. (275 aa)
	wdr61	WD repeat domain 61. (305 aa)
	rtf1	RTF1 homolog, Paf1/RNA polymerase II complex component. (677 aa)
	gtf2e1	General transcription factor IIE, polypeptide 1, alpha. (446 aa)
	polr2j	Polymerase (RNA) II (DNA directed) polypeptide J. (149 aa)
	supt3h	SPT3 homolog, SAGA and STAGA complex component. (346 aa)
	polr2m	RNA polymerase II subunit M. (351 aa)
	cinp	Cyclin-dependent kinase 2 interacting protein. (198 aa)
	gtf2h5	General transcription factor IIH, polypeptide 5. (71 aa)
	recql5	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (996 aa)
	LOC108249852	SH3-binding domain protein 5-like, a. (425 aa)
	Polr2d	Polymerase (RNA) II (DNA directed) polypeptide D. (177 aa)
	taf11	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (204 aa)
	taf5l	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor. (600 aa)
	gtf2a2	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (109 aa)
	polr2g	Polymerase (RNA) II (DNA directed) polypeptide G-like. (189 aa)
	taf1	Transcription initiation factor TFIID subunit. (1824 aa)
	LOC108237948	Regulation of nuclear pre-mRNA domain containing 2a. (1060 aa)
	rprd1b	Regulation of nuclear pre-mRNA domain containing 1B. (328 aa)
	TAF4	TATA-box binding protein associated factor 4. (894 aa)
	cdk7	Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (343 aa)
	gtf2e2	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (287 aa)
	gtf2f1	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (530 aa)
	LOC108240442	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (261 aa)
	LOC108241104	Regulation of nuclear pre-mRNA domain containing 2b. (1096 aa)
	LOC108243306	TAFH domain-containing protein. (1037 aa)
	gtf2h4	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (463 aa)
	LOC108244450	General transcription factor IIH, polypeptide 4. (438 aa)
	polr2i	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
	leo1	LEO1 homolog, Paf1/RNA polymerase II complex component. (600 aa)
	taf8	TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (306 aa)
	ENSKMAP00000002894	RNA polymerase II associated protein 2. (496 aa)
	polr2l	Polymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
	gtf2a1	General transcription factor IIA, 1. (385 aa)
	taf3	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto. (982 aa)
	Cdk20	Uncharacterized protein. (114 aa)
	LOC108238163	Regulation of nuclear pre-mRNA domain containing 1A. (294 aa)
	cdc73	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae). (530 aa)
	ccnh	Cyclin H; Belongs to the cyclin family. (333 aa)
	LOC112450151	Uncharacterized protein. (205 aa)
	wdr47	WD repeat domain 47a. (915 aa)
	ctr9	CTR9 homolog, Paf1/RNA polymerase II complex component. (1155 aa)
	paf1	PAF1 homolog, Paf1/RNA polymerase II complex component. (535 aa)
	pex2	Peroxisomal biogenesis factor 2. (321 aa)
	LOC108248915	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (58 aa)
	polr2a	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1777 aa)
	gtf2a1l	General transcription factor IIA, 1-like. (427 aa)
	ENSKMAP00000023670	TAF4 domain-containing protein. (300 aa)
	polr2b	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
	gtf2h3	General transcription factor IIH, polypeptide 3. (299 aa)
	taf2	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (1215 aa)
	tbp	TATA box binding protein. (304 aa)
	gtf2h1	General transcription factor IIH, polypeptide 1. (409 aa)
	ENSKMAP00000028503	PH_TFIIH domain-containing protein. (131 aa)
	taf5	TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (749 aa)
	gtf2f2	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (268 aa)
	ercc3	Excision repair cross-complementation group 3. (783 aa)
	LOC108232507	General transcription factor IIH subunit. (392 aa)
	LOC108234263	WD repeat domain 47b. (882 aa)
	LOC108251031	TAFH domain-containing protein. (933 aa)
	mnat1	CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (311 aa)
	POLR2E	RNA polymerase II subunit E. (210 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cdk20	ENSKMAP00000002894	ENSKMAP00000005890	ENSKMAP00000002894	Uncharacterized protein.	RNA polymerase II associated protein 2.	0.402
Cdk20	ENSKMAP00000023670	ENSKMAP00000005890	ENSKMAP00000023670	Uncharacterized protein.	TAF4 domain-containing protein.	0.594
Cdk20	ENSKMAP00000028503	ENSKMAP00000005890	ENSKMAP00000028503	Uncharacterized protein.	PH_TFIIH domain-containing protein.	0.841
Cdk20	LOC108232507	ENSKMAP00000005890	ENSKMAP00000029528	Uncharacterized protein.	General transcription factor IIH subunit.	0.935
Cdk20	LOC108239717	ENSKMAP00000005890	ENSKMAP00000010309	Uncharacterized protein.	Polymerase (RNA) II (DNA directed) polypeptide K.	0.676
Cdk20	LOC108240442	ENSKMAP00000005890	ENSKMAP00000001506	Uncharacterized protein.	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	0.669
Cdk20	LOC108243306	ENSKMAP00000005890	ENSKMAP00000001839	Uncharacterized protein.	TAFH domain-containing protein.	0.594
Cdk20	LOC108248915	ENSKMAP00000005890	ENSKMAP00000022040	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.676
Cdk20	LOC108251031	ENSKMAP00000005890	ENSKMAP00000009198	Uncharacterized protein.	TAFH domain-containing protein.	0.594
Cdk20	LOC112450151	ENSKMAP00000005890	ENSKMAP00000007016	Uncharacterized protein.	Uncharacterized protein.	0.697
Cdk20	POLR2E	ENSKMAP00000005890	ENSKMAP00000007935	Uncharacterized protein.	RNA polymerase II subunit E.	0.775
Cdk20	Polr2d	ENSKMAP00000005890	ENSKMAP00000014234	Uncharacterized protein.	Polymerase (RNA) II (DNA directed) polypeptide D.	0.858
Cdk20	TAF4	ENSKMAP00000005890	ENSKMAP00000017183	Uncharacterized protein.	TATA-box binding protein associated factor 4.	0.594
Cdk20	ccnh	ENSKMAP00000005890	ENSKMAP00000006920	Uncharacterized protein.	Cyclin H; Belongs to the cyclin family.	0.942
Cdk20	ercc3	ENSKMAP00000005890	ENSKMAP00000029380	Uncharacterized protein.	Excision repair cross-complementation group 3.	0.929
Cdk20	gtf2a1	ENSKMAP00000005890	ENSKMAP00000004680	Uncharacterized protein.	General transcription factor IIA, 1.	0.713
Cdk20	gtf2a1l	ENSKMAP00000005890	ENSKMAP00000022412	Uncharacterized protein.	General transcription factor IIA, 1-like.	0.637
Cdk20	gtf2a2	ENSKMAP00000005890	ENSKMAP00000014646	Uncharacterized protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.784
Cdk20	gtf2e1	ENSKMAP00000005890	ENSKMAP00000020856	Uncharacterized protein.	General transcription factor IIE, polypeptide 1, alpha.	0.923
Cdk20	gtf2e2	ENSKMAP00000005890	ENSKMAP00000000406	Uncharacterized protein.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.930