13 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	dcx	Uncharacterized protein. (379 aa)
	ercc8	Excision repair cross-complementation group 8. (401 aa)
	rbx1	Ring-box 1, E3 ubiquitin protein ligase. (108 aa)
	det1	DET1 partner of COP1 E3 ubiquitin ligase. (551 aa)
	dtl	Denticleless E3 ubiquitin protein ligase homolog (Drosophila). (621 aa)
	crbn	Cereblon. (448 aa)
	trpc4ap	Transient receptor potential cation channel, subfamily C, member 4 associated protein a. (775 aa)
	LOC108229807	Cullin 4A; Belongs to the cullin family. (746 aa)
	cop1	COP1 E3 ubiquitin ligase. (708 aa)
	glmn	Glomulin, FKBP associated protein a. (600 aa)
	ddb1	Damage-specific DNA binding protein 1. (1075 aa)
	ENSKMAP00000005141	Si:ch211-51h9.7. (135 aa)
	LOC108237748	RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events. (367 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSKMAP00000005141	LOC108229807	ENSKMAP00000005141	ENSKMAP00000029593	Si:ch211-51h9.7.	Cullin 4A; Belongs to the cullin family.	0.683
ENSKMAP00000005141	ddb1	ENSKMAP00000005141	ENSKMAP00000003119	Si:ch211-51h9.7.	Damage-specific DNA binding protein 1.	0.920
ENSKMAP00000005141	rbx1	ENSKMAP00000005141	ENSKMAP00000020413	Si:ch211-51h9.7.	Ring-box 1, E3 ubiquitin protein ligase.	0.629
LOC108229807	ENSKMAP00000005141	ENSKMAP00000029593	ENSKMAP00000005141	Cullin 4A; Belongs to the cullin family.	Si:ch211-51h9.7.	0.683
LOC108229807	cop1	ENSKMAP00000029593	ENSKMAP00000028977	Cullin 4A; Belongs to the cullin family.	COP1 E3 ubiquitin ligase.	0.763
LOC108229807	crbn	ENSKMAP00000029593	ENSKMAP00000026408	Cullin 4A; Belongs to the cullin family.	Cereblon.	0.852
LOC108229807	ddb1	ENSKMAP00000029593	ENSKMAP00000003119	Cullin 4A; Belongs to the cullin family.	Damage-specific DNA binding protein 1.	0.978
LOC108229807	det1	ENSKMAP00000029593	ENSKMAP00000022377	Cullin 4A; Belongs to the cullin family.	DET1 partner of COP1 E3 ubiquitin ligase.	0.812
LOC108229807	dtl	ENSKMAP00000029593	ENSKMAP00000024301	Cullin 4A; Belongs to the cullin family.	Denticleless E3 ubiquitin protein ligase homolog (Drosophila).	0.950
LOC108229807	ercc8	ENSKMAP00000029593	ENSKMAP00000019650	Cullin 4A; Belongs to the cullin family.	Excision repair cross-complementation group 8.	0.964
LOC108229807	rbx1	ENSKMAP00000029593	ENSKMAP00000020413	Cullin 4A; Belongs to the cullin family.	Ring-box 1, E3 ubiquitin protein ligase.	0.967
LOC108229807	trpc4ap	ENSKMAP00000029593	ENSKMAP00000028667	Cullin 4A; Belongs to the cullin family.	Transient receptor potential cation channel, subfamily C, member 4 associated protein a.	0.453
LOC108237748	dcx	ENSKMAP00000008946	ENSKMAP00000013238	RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events.	Uncharacterized protein.	0.574
cop1	LOC108229807	ENSKMAP00000028977	ENSKMAP00000029593	COP1 E3 ubiquitin ligase.	Cullin 4A; Belongs to the cullin family.	0.763
cop1	ddb1	ENSKMAP00000028977	ENSKMAP00000003119	COP1 E3 ubiquitin ligase.	Damage-specific DNA binding protein 1.	0.927
cop1	det1	ENSKMAP00000028977	ENSKMAP00000022377	COP1 E3 ubiquitin ligase.	DET1 partner of COP1 E3 ubiquitin ligase.	0.990
cop1	dtl	ENSKMAP00000028977	ENSKMAP00000024301	COP1 E3 ubiquitin ligase.	Denticleless E3 ubiquitin protein ligase homolog (Drosophila).	0.649
cop1	ercc8	ENSKMAP00000028977	ENSKMAP00000019650	COP1 E3 ubiquitin ligase.	Excision repair cross-complementation group 8.	0.959
cop1	rbx1	ENSKMAP00000028977	ENSKMAP00000020413	COP1 E3 ubiquitin ligase.	Ring-box 1, E3 ubiquitin protein ligase.	0.808
crbn	LOC108229807	ENSKMAP00000026408	ENSKMAP00000029593	Cereblon.	Cullin 4A; Belongs to the cullin family.	0.852