6 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108240719	Small ubiquitin-related modifier. (94 aa)
	LOC108242722	Small ubiquitin-related modifier. (96 aa)
	sumo1	Small ubiquitin-related modifier. (105 aa)
	ENSKMAP00000005692	Rad60-SLD domain-containing protein. (139 aa)
	LOC108232577	Small ubiquitin-related modifier. (94 aa)
	sumo2	Small ubiquitin-related modifier. (95 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108232577	sumo1	ENSKMAP00000016078	ENSKMAP00000005306	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.660
LOC108240719	sumo1	ENSKMAP00000016972	ENSKMAP00000005306	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.660
LOC108242722	sumo1	ENSKMAP00000001814	ENSKMAP00000005306	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.661
sumo1	LOC108232577	ENSKMAP00000005306	ENSKMAP00000016078	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.660
sumo1	LOC108240719	ENSKMAP00000005306	ENSKMAP00000016972	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.660
sumo1	LOC108242722	ENSKMAP00000005306	ENSKMAP00000001814	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.661
sumo1	sumo2	ENSKMAP00000005306	ENSKMAP00000028132	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.661
sumo2	sumo1	ENSKMAP00000028132	ENSKMAP00000005306	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.661