4 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mapre2	Microtubule-associated protein, RP/EB family, member 2. (336 aa)
	LOC108239017	Microtubule-associated protein, RP/EB family, member 3a. (262 aa)
	mapre1	Microtubule-associated protein, RP/EB family, member 1b. (296 aa)
	LOC108233340	Microtubule-associated protein, RP/EB family, member 3b. (274 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108233340	mapre1	ENSKMAP00000030085	ENSKMAP00000027380	Microtubule-associated protein, RP/EB family, member 3b.	Microtubule-associated protein, RP/EB family, member 1b.	0.624
LOC108239017	mapre1	ENSKMAP00000018913	ENSKMAP00000027380	Microtubule-associated protein, RP/EB family, member 3a.	Microtubule-associated protein, RP/EB family, member 1b.	0.621
mapre1	LOC108233340	ENSKMAP00000027380	ENSKMAP00000030085	Microtubule-associated protein, RP/EB family, member 1b.	Microtubule-associated protein, RP/EB family, member 3b.	0.624
mapre1	LOC108239017	ENSKMAP00000027380	ENSKMAP00000018913	Microtubule-associated protein, RP/EB family, member 1b.	Microtubule-associated protein, RP/EB family, member 3a.	0.621
mapre1	mapre2	ENSKMAP00000027380	ENSKMAP00000007075	Microtubule-associated protein, RP/EB family, member 1b.	Microtubule-associated protein, RP/EB family, member 2.	0.627
mapre2	mapre1	ENSKMAP00000007075	ENSKMAP00000027380	Microtubule-associated protein, RP/EB family, member 2.	Microtubule-associated protein, RP/EB family, member 1b.	0.627