13 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSKMAP00000005163	Uncharacterized protein. (495 aa)
	erbb4	Receptor protein-tyrosine kinase. (1407 aa)
	egfr	Receptor protein-tyrosine kinase. (1196 aa)
	ENSKMAP00000002621	Uncharacterized protein. (88 aa)
	LOC108243323	Tyrosine-protein kinase receptor. (1420 aa)
	LOC108230621	Tyrosine-protein kinase receptor. (1367 aa)
	insr	Tyrosine-protein kinase receptor. (1354 aa)
	LOC108235300	Erb-b2 receptor tyrosine kinase 3b. (1454 aa)
	LOC108248942	Receptor protein-tyrosine kinase. (1296 aa)
	ENSKMAP00000028224	Erb-b2 receptor tyrosine kinase 4b. (421 aa)
	ENSKMAP00000028192	Uncharacterized protein. (93 aa)
	erbb3	Protein kinase domain-containing protein. (1419 aa)
	LOC108230129	Tyrosine-protein kinase receptor. (1420 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSKMAP00000005163	LOC108248942	ENSKMAP00000005163	ENSKMAP00000028565	Uncharacterized protein.	Receptor protein-tyrosine kinase.	0.911
ENSKMAP00000005163	egfr	ENSKMAP00000005163	ENSKMAP00000004149	Uncharacterized protein.	Receptor protein-tyrosine kinase.	0.901
LOC108230129	LOC108243323	ENSKMAP00000020687	ENSKMAP00000003387	Tyrosine-protein kinase receptor.	Tyrosine-protein kinase receptor.	0.901
LOC108230129	insr	ENSKMAP00000020687	ENSKMAP00000029721	Tyrosine-protein kinase receptor.	Tyrosine-protein kinase receptor.	0.902
LOC108235300	LOC108248942	ENSKMAP00000028966	ENSKMAP00000028565	Erb-b2 receptor tyrosine kinase 3b.	Receptor protein-tyrosine kinase.	0.841
LOC108235300	erbb3	ENSKMAP00000028966	ENSKMAP00000026346	Erb-b2 receptor tyrosine kinase 3b.	Protein kinase domain-containing protein.	0.902
LOC108243323	LOC108230129	ENSKMAP00000003387	ENSKMAP00000020687	Tyrosine-protein kinase receptor.	Tyrosine-protein kinase receptor.	0.901
LOC108243323	insr	ENSKMAP00000003387	ENSKMAP00000029721	Tyrosine-protein kinase receptor.	Tyrosine-protein kinase receptor.	0.902
LOC108248942	ENSKMAP00000005163	ENSKMAP00000028565	ENSKMAP00000005163	Receptor protein-tyrosine kinase.	Uncharacterized protein.	0.911
LOC108248942	LOC108235300	ENSKMAP00000028565	ENSKMAP00000028966	Receptor protein-tyrosine kinase.	Erb-b2 receptor tyrosine kinase 3b.	0.841
LOC108248942	egfr	ENSKMAP00000028565	ENSKMAP00000004149	Receptor protein-tyrosine kinase.	Receptor protein-tyrosine kinase.	0.913
LOC108248942	erbb3	ENSKMAP00000028565	ENSKMAP00000026346	Receptor protein-tyrosine kinase.	Protein kinase domain-containing protein.	0.842
LOC108248942	erbb4	ENSKMAP00000028565	ENSKMAP00000004699	Receptor protein-tyrosine kinase.	Receptor protein-tyrosine kinase.	0.840
egfr	ENSKMAP00000005163	ENSKMAP00000004149	ENSKMAP00000005163	Receptor protein-tyrosine kinase.	Uncharacterized protein.	0.901
egfr	LOC108248942	ENSKMAP00000004149	ENSKMAP00000028565	Receptor protein-tyrosine kinase.	Receptor protein-tyrosine kinase.	0.913
erbb3	LOC108235300	ENSKMAP00000026346	ENSKMAP00000028966	Protein kinase domain-containing protein.	Erb-b2 receptor tyrosine kinase 3b.	0.902
erbb3	LOC108248942	ENSKMAP00000026346	ENSKMAP00000028565	Protein kinase domain-containing protein.	Receptor protein-tyrosine kinase.	0.842
erbb4	LOC108248942	ENSKMAP00000004699	ENSKMAP00000028565	Receptor protein-tyrosine kinase.	Receptor protein-tyrosine kinase.	0.840
insr	LOC108230129	ENSKMAP00000029721	ENSKMAP00000020687	Tyrosine-protein kinase receptor.	Tyrosine-protein kinase receptor.	0.902
insr	LOC108243323	ENSKMAP00000029721	ENSKMAP00000003387	Tyrosine-protein kinase receptor.	Tyrosine-protein kinase receptor.	0.902