5 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Nfe2	Nuclear factor, erythroid 2. (432 aa)
	LOC108246726	Nuclear factor, erythroid 2-like 1a. (752 aa)
	LOC108242114	Nuclear factor, erythroid 2-like 3. (650 aa)
	nfe2l2	Nuclear factor, erythroid 2-like 2a. (613 aa)
	NFE2L1	Nuclear factor, erythroid 2 like 1. (787 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108242114	NFE2L1	ENSKMAP00000025980	ENSKMAP00000006017	Nuclear factor, erythroid 2-like 3.	Nuclear factor, erythroid 2 like 1.	0.504
NFE2L1	LOC108242114	ENSKMAP00000006017	ENSKMAP00000025980	Nuclear factor, erythroid 2 like 1.	Nuclear factor, erythroid 2-like 3.	0.504
NFE2L1	Nfe2	ENSKMAP00000006017	ENSKMAP00000028103	Nuclear factor, erythroid 2 like 1.	Nuclear factor, erythroid 2.	0.405
Nfe2	NFE2L1	ENSKMAP00000028103	ENSKMAP00000006017	Nuclear factor, erythroid 2.	Nuclear factor, erythroid 2 like 1.	0.405
Nfe2	nfe2l2	ENSKMAP00000028103	ENSKMAP00000021525	Nuclear factor, erythroid 2.	Nuclear factor, erythroid 2-like 2a.	0.932
nfe2l2	Nfe2	ENSKMAP00000021525	ENSKMAP00000028103	Nuclear factor, erythroid 2-like 2a.	Nuclear factor, erythroid 2.	0.932