51 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	fndc3a	Fibronectin type III domain containing 3A. (1238 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	LOC108233675	Uncharacterized protein. (161 aa)
	CSDE1	Cold shock domain containing E1, RNA-binding. (861 aa)
	LOC108245177	Signal transducer and activator of transcription. (788 aa)
	fndc3b	Fibronectin type III domain containing 3Ba. (896 aa)
	LOC108233117	E3 ubiquitin-protein ligase. (897 aa)
	nedd4	NEDD4 E3 ubiquitin protein ligase a. (1225 aa)
	LOC108238424	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit. (1068 aa)
	ADAP1	ArfGAP with dual PH domains 1. (377 aa)
	esr1	Estrogen receptor; The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues. (643 aa)
	LOC108243005	Zgc:55558. (187 aa)
	egf	Epidermal growth factor. (1111 aa)
	LOC108228240	Uncharacterized protein. (367 aa)
	LOC108233230	Uncharacterized protein. (377 aa)
	psen2	Presenilin 2. (352 aa)
	wwox	WW domain containing oxidoreductase. (411 aa)
	ubb	Uncharacterized protein. (270 aa)
	LOC108236256	Growth factor receptor-bound protein 2b. (224 aa)
	wwp1	WW domain containing E3 ubiquitin protein ligase 1. (960 aa)
	LOC108231089	Betacellulin, epidermal growth factor family member. (184 aa)
	LOC108236992	Neuregulin 2a. (707 aa)
	LOC108235300	Erb-b2 receptor tyrosine kinase 3b. (1454 aa)
	LOC108239206	ArfGAP with dual PH domains 2. (387 aa)
	ENSKMAP00000028283	Protein kinase domain-containing protein. (472 aa)
	aph1a	APH1B gamma secretase subunit. (258 aa)
	ENSKMAP00000028224	Erb-b2 receptor tyrosine kinase 4b. (421 aa)
	ENSKMAP00000028192	Uncharacterized protein. (93 aa)
	LOC108243804	Signal transducer and activator of transcription. (791 aa)
	erbb3	Protein kinase domain-containing protein. (1419 aa)
	LOC108242040	Heparin-binding EGF-like growth factor a. (234 aa)
	psenen	Presenilin enhancer, gamma-secretase subunit. (101 aa)
	NCSTN	Nicastrin. (701 aa)
	nrg4	EGF-like domain-containing protein. (106 aa)
	LOC108237314	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family. (482 aa)
	LOC108246056	Crystallin, beta B1, like 3; Belongs to the beta/gamma-crystallin family. (209 aa)
	ENSKMAP00000021818	EGF-like domain-containing protein. (279 aa)
	SRC	Tyrosine-protein kinase. (550 aa)
	LOC108231686	E3 ubiquitin-protein ligase. (868 aa)
	LOC108238002	Neuregulin 2b. (563 aa)
	LOC108245313	Uncharacterized protein. (379 aa)
	LOC108238240	MAX dimerization protein 4. (198 aa)
	LOC108239982	HRas proto-oncogene, GTPase a. (189 aa)
	LOC108237634	Tyrosine-protein kinase. (549 aa)
	ENSKMAP00000003379	SHC (Src homology 2 domain containing) transforming protein 1. (340 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	erbb4	Receptor protein-tyrosine kinase. (1407 aa)
	LOC108248584	Zgc:158659; Belongs to the PI3/PI4-kinase family. (1070 aa)
	yap1	Yes-associated protein 1. (438 aa)
	KRAS	GTPase KRas; Ras proteins bind GDP/GTP and possess intrinsic GTPase activity. Plays an important role in the regulation of cell proliferation. May play a role in promoting oncogenic events by inducing transcriptional silencing of tumor suppressor genes (TSGs). Belongs to the small GTPase superfamily. Ras family. (189 aa)
	PIK3CA	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit. (1068 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSDE1	ENSKMAP00000003379	ENSKMAP00000007641	ENSKMAP00000003379	Cold shock domain containing E1, RNA-binding.	SHC (Src homology 2 domain containing) transforming protein 1.	0.436
CSDE1	ENSKMAP00000028192	ENSKMAP00000007641	ENSKMAP00000028192	Cold shock domain containing E1, RNA-binding.	Uncharacterized protein.	0.485
CSDE1	ENSKMAP00000028224	ENSKMAP00000007641	ENSKMAP00000028224	Cold shock domain containing E1, RNA-binding.	Erb-b2 receptor tyrosine kinase 4b.	0.485
CSDE1	ENSKMAP00000028283	ENSKMAP00000007641	ENSKMAP00000028283	Cold shock domain containing E1, RNA-binding.	Protein kinase domain-containing protein.	0.485
CSDE1	LOC108231089	ENSKMAP00000007641	ENSKMAP00000017182	Cold shock domain containing E1, RNA-binding.	Betacellulin, epidermal growth factor family member.	0.444
CSDE1	LOC108233675	ENSKMAP00000007641	ENSKMAP00000007418	Cold shock domain containing E1, RNA-binding.	Uncharacterized protein.	0.421
CSDE1	LOC108235300	ENSKMAP00000007641	ENSKMAP00000028966	Cold shock domain containing E1, RNA-binding.	Erb-b2 receptor tyrosine kinase 3b.	0.485
CSDE1	LOC108236256	ENSKMAP00000007641	ENSKMAP00000017060	Cold shock domain containing E1, RNA-binding.	Growth factor receptor-bound protein 2b.	0.678
CSDE1	LOC108237634	ENSKMAP00000007641	ENSKMAP00000002899	Cold shock domain containing E1, RNA-binding.	Tyrosine-protein kinase.	0.428
CSDE1	LOC108238424	ENSKMAP00000007641	ENSKMAP00000011820	Cold shock domain containing E1, RNA-binding.	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	0.518
CSDE1	LOC108242040	ENSKMAP00000007641	ENSKMAP00000025271	Cold shock domain containing E1, RNA-binding.	Heparin-binding EGF-like growth factor a.	0.438
CSDE1	LOC108248584	ENSKMAP00000007641	ENSKMAP00000004760	Cold shock domain containing E1, RNA-binding.	Zgc:158659; Belongs to the PI3/PI4-kinase family.	0.518
CSDE1	PIK3CA	ENSKMAP00000007641	ENSKMAP00000005670	Cold shock domain containing E1, RNA-binding.	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	0.518
CSDE1	SRC	ENSKMAP00000007641	ENSKMAP00000019871	Cold shock domain containing E1, RNA-binding.	Tyrosine-protein kinase.	0.428
CSDE1	egf	ENSKMAP00000007641	ENSKMAP00000013694	Cold shock domain containing E1, RNA-binding.	Epidermal growth factor.	0.488
CSDE1	erbb3	ENSKMAP00000007641	ENSKMAP00000026346	Cold shock domain containing E1, RNA-binding.	Protein kinase domain-containing protein.	0.485
CSDE1	erbb4	ENSKMAP00000007641	ENSKMAP00000004699	Cold shock domain containing E1, RNA-binding.	Receptor protein-tyrosine kinase.	0.485
CSDE1	rps27a	ENSKMAP00000007641	ENSKMAP00000004139	Cold shock domain containing E1, RNA-binding.	Ribosomal protein S27a.	0.494
CSDE1	uba52	ENSKMAP00000007641	ENSKMAP00000006381	Cold shock domain containing E1, RNA-binding.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.509
CSDE1	ubb	ENSKMAP00000007641	ENSKMAP00000016559	Cold shock domain containing E1, RNA-binding.	Uncharacterized protein.	0.516