29 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	prim2	DNA primase large subunit; Regulatory subunit of the DNA primase complex and component of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which play an essential role in the initiation of DNA synthesis. The primase subunit of the polymerase alpha complex initiates DNA synthesis by oligomerising short RNA primers on both leading and lagging strands. (516 aa)
	pcna	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
	chtf8	CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae). (136 aa)
	rcbtb2	Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (527 aa)
	pold3	Polymerase (DNA-directed), delta 3, accessory subunit. (440 aa)
	pola1	DNA polymerase. (1476 aa)
	prim1	DNA primase; Belongs to the eukaryotic-type primase small subunit family. (427 aa)
	LOC108245905	TERF1 (TRF1)-interacting nuclear factor 2. (570 aa)
	rfc4	Replication factor C (activator 1) 4. (388 aa)
	ten1	TEN1 subunit of CST complex. (135 aa)
	LOC108244139	Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (531 aa)
	ENSKMAP00000013709	Uncharacterized protein. (437 aa)
	terf2ip	Uncharacterized protein. (682 aa)
	pold1	DNA polymerase. (1105 aa)
	rfc2	Replication factor C (activator 1) 2. (357 aa)
	pold4	Uncharacterized protein. (110 aa)
	chtf18	CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae). (775 aa)
	terf1	Telomeric repeat-binding factor; Binds the telomeric double-stranded 5'-TTAGGG-3' repeat. (366 aa)
	pot1	Protection of telomeres 1 homolog. (770 aa)
	dscc1	DNA replication and sister chromatid cohesion 1. (390 aa)
	pola2	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (602 aa)
	terf2	HTH myb-type domain-containing protein. (603 aa)
	stn1	STN1 subunit of CST complex. (315 aa)
	rfc3	Replication factor C (activator 1) 3. (356 aa)
	ctc1	Uncharacterized protein. (993 aa)
	rfc1	Replication factor C subunit 1. (1180 aa)
	rfc5	Replication factor C (activator 1) 5. (339 aa)
	RCBTB1	RCC1 and BTB domain containing protein 1. (531 aa)
	pold2	Polymerase (DNA directed), delta 2, regulatory subunit. (471 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSKMAP00000013709	LOC108245905	ENSKMAP00000013709	ENSKMAP00000016158	Uncharacterized protein.	TERF1 (TRF1)-interacting nuclear factor 2.	0.995
ENSKMAP00000013709	ctc1	ENSKMAP00000013709	ENSKMAP00000007122	Uncharacterized protein.	Uncharacterized protein.	0.650
ENSKMAP00000013709	pot1	ENSKMAP00000013709	ENSKMAP00000008433	Uncharacterized protein.	Protection of telomeres 1 homolog.	0.993
ENSKMAP00000013709	stn1	ENSKMAP00000013709	ENSKMAP00000028897	Uncharacterized protein.	STN1 subunit of CST complex.	0.860
ENSKMAP00000013709	ten1	ENSKMAP00000013709	ENSKMAP00000015426	Uncharacterized protein.	TEN1 subunit of CST complex.	0.739
ENSKMAP00000013709	terf1	ENSKMAP00000013709	ENSKMAP00000009379	Uncharacterized protein.	Telomeric repeat-binding factor; Binds the telomeric double-stranded 5'-TTAGGG-3' repeat.	0.968
ENSKMAP00000013709	terf2	ENSKMAP00000013709	ENSKMAP00000025205	Uncharacterized protein.	HTH myb-type domain-containing protein.	0.975
ENSKMAP00000013709	terf2ip	ENSKMAP00000013709	ENSKMAP00000013598	Uncharacterized protein.	Uncharacterized protein.	0.972
LOC108245905	ENSKMAP00000013709	ENSKMAP00000016158	ENSKMAP00000013709	TERF1 (TRF1)-interacting nuclear factor 2.	Uncharacterized protein.	0.995
LOC108245905	chtf18	ENSKMAP00000016158	ENSKMAP00000009716	TERF1 (TRF1)-interacting nuclear factor 2.	CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae).	0.484
LOC108245905	ctc1	ENSKMAP00000016158	ENSKMAP00000007122	TERF1 (TRF1)-interacting nuclear factor 2.	Uncharacterized protein.	0.815
LOC108245905	pcna	ENSKMAP00000016158	ENSKMAP00000003800	TERF1 (TRF1)-interacting nuclear factor 2.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.586
LOC108245905	pola1	ENSKMAP00000016158	ENSKMAP00000020098	TERF1 (TRF1)-interacting nuclear factor 2.	DNA polymerase.	0.602
LOC108245905	pola2	ENSKMAP00000016158	ENSKMAP00000024565	TERF1 (TRF1)-interacting nuclear factor 2.	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis.	0.589
LOC108245905	pold1	ENSKMAP00000016158	ENSKMAP00000013397	TERF1 (TRF1)-interacting nuclear factor 2.	DNA polymerase.	0.587
LOC108245905	pot1	ENSKMAP00000016158	ENSKMAP00000008433	TERF1 (TRF1)-interacting nuclear factor 2.	Protection of telomeres 1 homolog.	0.995
LOC108245905	rfc1	ENSKMAP00000016158	ENSKMAP00000000045	TERF1 (TRF1)-interacting nuclear factor 2.	Replication factor C subunit 1.	0.584
LOC108245905	rfc2	ENSKMAP00000016158	ENSKMAP00000011442	TERF1 (TRF1)-interacting nuclear factor 2.	Replication factor C (activator 1) 2.	0.582
LOC108245905	rfc3	ENSKMAP00000016158	ENSKMAP00000007640	TERF1 (TRF1)-interacting nuclear factor 2.	Replication factor C (activator 1) 3.	0.622
LOC108245905	rfc4	ENSKMAP00000016158	ENSKMAP00000015449	TERF1 (TRF1)-interacting nuclear factor 2.	Replication factor C (activator 1) 4.	0.582