11 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tbk1	TANK-binding kinase 1. (722 aa)
	ENSKMAP00000027303	Uncharacterized protein. (606 aa)
	DDX41	DEAD-box helicase 41. (614 aa)
	trim32	Tripartite motif containing 32. (682 aa)
	LOC108237204	Interferon regulatory factor 3. (455 aa)
	sting1	Transmembrane protein 173. (403 aa)
	ubb	Uncharacterized protein. (270 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	trim13	Tripartite motif containing 13. (388 aa)
	LOC108248506	Deltex 4, E3 ubiquitin ligase a. (615 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX41	LOC108237204	ENSKMAP00000026076	ENSKMAP00000021182	DEAD-box helicase 41.	Interferon regulatory factor 3.	0.555
DDX41	sting1	ENSKMAP00000026076	ENSKMAP00000019366	DEAD-box helicase 41.	Transmembrane protein 173.	0.559
DDX41	tbk1	ENSKMAP00000026076	ENSKMAP00000002033	DEAD-box helicase 41.	TANK-binding kinase 1.	0.440
DDX41	ubb	ENSKMAP00000026076	ENSKMAP00000016559	DEAD-box helicase 41.	Uncharacterized protein.	0.599
ENSKMAP00000027303	rps27a	ENSKMAP00000027303	ENSKMAP00000004139	Uncharacterized protein.	Ribosomal protein S27a.	0.582
ENSKMAP00000027303	uba52	ENSKMAP00000027303	ENSKMAP00000006381	Uncharacterized protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.475
ENSKMAP00000027303	ubb	ENSKMAP00000027303	ENSKMAP00000016559	Uncharacterized protein.	Uncharacterized protein.	0.539
LOC108237204	DDX41	ENSKMAP00000021182	ENSKMAP00000026076	Interferon regulatory factor 3.	DEAD-box helicase 41.	0.555
LOC108237204	rps27a	ENSKMAP00000021182	ENSKMAP00000004139	Interferon regulatory factor 3.	Ribosomal protein S27a.	0.525
LOC108237204	sting1	ENSKMAP00000021182	ENSKMAP00000019366	Interferon regulatory factor 3.	Transmembrane protein 173.	0.966
LOC108237204	tbk1	ENSKMAP00000021182	ENSKMAP00000002033	Interferon regulatory factor 3.	TANK-binding kinase 1.	0.939
LOC108237204	trim13	ENSKMAP00000021182	ENSKMAP00000002828	Interferon regulatory factor 3.	Tripartite motif containing 13.	0.711
LOC108237204	trim32	ENSKMAP00000021182	ENSKMAP00000021501	Interferon regulatory factor 3.	Tripartite motif containing 32.	0.686
LOC108237204	ubb	ENSKMAP00000021182	ENSKMAP00000016559	Interferon regulatory factor 3.	Uncharacterized protein.	0.486
LOC108248506	rps27a	ENSKMAP00000001837	ENSKMAP00000004139	Deltex 4, E3 ubiquitin ligase a.	Ribosomal protein S27a.	0.582
LOC108248506	uba52	ENSKMAP00000001837	ENSKMAP00000006381	Deltex 4, E3 ubiquitin ligase a.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.475
LOC108248506	ubb	ENSKMAP00000001837	ENSKMAP00000016559	Deltex 4, E3 ubiquitin ligase a.	Uncharacterized protein.	0.539
rps27a	ENSKMAP00000027303	ENSKMAP00000004139	ENSKMAP00000027303	Ribosomal protein S27a.	Uncharacterized protein.	0.582
rps27a	LOC108237204	ENSKMAP00000004139	ENSKMAP00000021182	Ribosomal protein S27a.	Interferon regulatory factor 3.	0.525
rps27a	LOC108248506	ENSKMAP00000004139	ENSKMAP00000001837	Ribosomal protein S27a.	Deltex 4, E3 ubiquitin ligase a.	0.582