63 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108244953	Uncharacterized protein. (480 aa)
	seh1l	SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family. (383 aa)
	mdm2	MDM2 proto-oncogene; Belongs to the MDM2/MDM4 family. (448 aa)
	nup107	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (908 aa)
	LOC108240408	RAN binding protein 2. (3043 aa)
	ENSKMAP00000002875	Uncharacterized protein. (333 aa)
	LOC108242772	Uncharacterized protein. (477 aa)
	LOC108242772-2	Uncharacterized protein. (473 aa)
	ENSKMAP00000002932	Uncharacterized protein. (477 aa)
	LOC108235874	Zgc:194990. (470 aa)
	LOC108242780	Uncharacterized protein. (479 aa)
	LOC108242778	Uncharacterized protein. (475 aa)
	ENSKMAP00000003131	Uncharacterized protein. (474 aa)
	pias4	Protein inhibitor of activated STAT, 4a. (507 aa)
	sumo1	Small ubiquitin-related modifier. (105 aa)
	ENSKMAP00000005644	B30.2/SPRY domain-containing protein. (362 aa)
	LOC108246285	Uncharacterized protein. (460 aa)
	nup58	Nucleoporin 58. (590 aa)
	rae1	Ribonucleic acid export 1. (368 aa)
	nup98	Nucleoporin 98. (1811 aa)
	LOC108242942	Si:ch211-120g10.1. (399 aa)
	LOC108239511	Translocated promoter region a, nuclear basket protein. (2040 aa)
	nup155	Nucleoporin 155. (1367 aa)
	nup160	Nucleoporin 160. (1399 aa)
	LOC108235347	Tripartite motif containing 35-28. (477 aa)
	nup188	Nucleoporin 188. (1712 aa)
	nup133	Nucleoporin 133. (1138 aa)
	nup35	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (297 aa)
	aaas	Achalasia, adrenocortical insufficiency, alacrimia. (518 aa)
	ube2i	Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
	nup37	Nucleoporin 37. (326 aa)
	LOC108241267	Uncharacterized protein. (463 aa)
	LOC108228292	Uncharacterized protein. (461 aa)
	tpr	Translocated promoter region b, nuclear basket protein. (2200 aa)
	LOC108241266	Tripartite motif containing 35-12. (509 aa)
	LOC108243658	Uncharacterized protein. (489 aa)
	LOC108241348	Tripartite motif containing 35-13. (313 aa)
	ENSKMAP00000019005	Uncharacterized protein. (384 aa)
	LOC108243646	Uncharacterized protein. (460 aa)
	nup210	Nucleoporin 210. (1882 aa)
	LOC108250709	Nuclear factor 7, ovary-like. (460 aa)
	LOC108250710	Uncharacterized protein. (461 aa)
	LOC108228363	Nucleoporin 50. (312 aa)
	ENSKMAP00000020176	Uncharacterized protein. (307 aa)
	LOC108228403	Uncharacterized protein. (461 aa)
	ENSKMAP00000020941	Uncharacterized protein. (477 aa)
	ENSKMAP00000021211	B30.2/SPRY domain-containing protein. (360 aa)
	LOC108250074	Nuclear factor 7, brain-like. (461 aa)
	LOC108249519	Si:dkey-219e21.2. (437 aa)
	LOC108244238	Si:dkey-219e21.4. (324 aa)
	LOC108236207	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
	NUP62	Nucleoporin 62. (552 aa)
	nup42	Nucleoporin 42. (436 aa)
	ENSKMAP00000025155	Uncharacterized protein. (470 aa)
	sec13	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family. (320 aa)
	LOC108238015	POM121 transmembrane nucleoporin. (1163 aa)
	vhl	Von Hippel-Lindau tumor suppressor. (168 aa)
	ENSKMAP00000027315	B30.2/SPRY domain-containing protein. (233 aa)
	ENSKMAP00000027885	Uncharacterized protein. (426 aa)
	nup85	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (651 aa)
	ndc1	NDC1 transmembrane nucleoporin. (669 aa)
	nup93	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (821 aa)
	nup43	Nucleoporin 43. (371 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108228363	LOC108236207	ENSKMAP00000019604	ENSKMAP00000021963	Nucleoporin 50.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.607
LOC108228363	LOC108238015	ENSKMAP00000019604	ENSKMAP00000026232	Nucleoporin 50.	POM121 transmembrane nucleoporin.	0.675
LOC108228363	LOC108239511	ENSKMAP00000019604	ENSKMAP00000012648	Nucleoporin 50.	Translocated promoter region a, nuclear basket protein.	0.783
LOC108228363	LOC108240408	ENSKMAP00000019604	ENSKMAP00000001474	Nucleoporin 50.	RAN binding protein 2.	0.959
LOC108228363	NUP62	ENSKMAP00000019604	ENSKMAP00000023361	Nucleoporin 50.	Nucleoporin 62.	0.889
LOC108228363	aaas	ENSKMAP00000019604	ENSKMAP00000015401	Nucleoporin 50.	Achalasia, adrenocortical insufficiency, alacrimia.	0.945
LOC108228363	ndc1	ENSKMAP00000019604	ENSKMAP00000028289	Nucleoporin 50.	NDC1 transmembrane nucleoporin.	0.937
LOC108228363	nup107	ENSKMAP00000019604	ENSKMAP00000001256	Nucleoporin 50.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.936
LOC108228363	nup133	ENSKMAP00000019604	ENSKMAP00000014359	Nucleoporin 50.	Nucleoporin 133.	0.922
LOC108228363	nup155	ENSKMAP00000019604	ENSKMAP00000012961	Nucleoporin 50.	Nucleoporin 155.	0.973
LOC108228363	nup160	ENSKMAP00000019604	ENSKMAP00000013739	Nucleoporin 50.	Nucleoporin 160.	0.885
LOC108228363	nup188	ENSKMAP00000019604	ENSKMAP00000014271	Nucleoporin 50.	Nucleoporin 188.	0.954
LOC108228363	nup210	ENSKMAP00000019604	ENSKMAP00000019170	Nucleoporin 50.	Nucleoporin 210.	0.970
LOC108228363	nup35	ENSKMAP00000019604	ENSKMAP00000014899	Nucleoporin 50.	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	0.975
LOC108228363	nup37	ENSKMAP00000019604	ENSKMAP00000017561	Nucleoporin 50.	Nucleoporin 37.	0.841
LOC108228363	nup42	ENSKMAP00000019604	ENSKMAP00000025100	Nucleoporin 50.	Nucleoporin 42.	0.873
LOC108228363	nup43	ENSKMAP00000019604	ENSKMAP00000030051	Nucleoporin 50.	Nucleoporin 43.	0.977
LOC108228363	nup58	ENSKMAP00000019604	ENSKMAP00000007511	Nucleoporin 50.	Nucleoporin 58.	0.836
LOC108228363	nup85	ENSKMAP00000019604	ENSKMAP00000028096	Nucleoporin 50.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.973
LOC108228363	nup93	ENSKMAP00000019604	ENSKMAP00000028864	Nucleoporin 50.	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.973