43 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108241416	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (672 aa)
	engase	Endo-beta-N-acetylglucosaminidase. (715 aa)
	RAD23B	RAD23 homolog B, nucleotide excision repair protein. (396 aa)
	pdia4	Protein disulfide-isomerase A4; Belongs to the protein disulfide isomerase family. (641 aa)
	MARCHF9	Membrane associated ring-CH-type finger 9. (302 aa)
	uggt2	UDP-glucose glycoprotein glucosyltransferase 2. (1526 aa)
	amfr	Autocrine motility factor receptor b. (623 aa)
	LOC108241508	Zgc:136908; Belongs to the AAA ATPase family. (808 aa)
	clgn	Calmegin. (649 aa)
	LOC108251406	Calnexin. (629 aa)
	spata5l1	Spermatogenesis associated 5-like 1. (747 aa)
	vcp	Valosin containing protein; Belongs to the AAA ATPase family. (806 aa)
	LOC108238666	RING-CH-type domain-containing protein. (922 aa)
	derl1	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family. (258 aa)
	LOC108230540	Calreticulin. (437 aa)
	uggt1	UDP-glucose glycoprotein glucosyltransferase 1. (1581 aa)
	ubb	Uncharacterized protein. (270 aa)
	ENSKMAP00000016431	RING-CH-type domain-containing protein. (234 aa)
	LOC108232532	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (862 aa)
	marchf4	Membrane-associated ring finger (C3HC4) 4. (391 aa)
	ngly1	N-glycanase 1. (639 aa)
	LOC108239428	RING-CH-type domain-containing protein. (248 aa)
	rnf139	Ring finger protein 139. (715 aa)
	marchf7	Membrane associated ring-CH-type finger 7. (769 aa)
	SPATA5	Spermatogenesis associated 5. (811 aa)
	pdia3	Protein disulfide-isomerase. (490 aa)
	edem1	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (639 aa)
	marchf2	Membrane-associated ring finger (C3HC4) 2. (247 aa)
	kxd1	KxDL motif containing 1. (185 aa)
	marchf8	Membrane-associated ring finger (C3HC4) 8. (287 aa)
	marchf1	Membrane-associated ring finger (C3HC4) 1. (563 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	ubxn1	UBX domain protein 1. (301 aa)
	ganab	Glucosidase, alpha; neutral AB; Belongs to the glycosyl hydrolase 31 family. (951 aa)
	psmc1	Proteasome 26S subunit, ATPase 1b; Belongs to the AAA ATPase family. (440 aa)
	LOC108248016	Membrane-associated ring finger (C3HC4) 9. (336 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	edem3	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (897 aa)
	man1b1	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (632 aa)
	mogs	Mannosyl-oligosaccharide glucosidase. (845 aa)
	marchf11	Membrane-associated ring finger (C3HC4) 11. (332 aa)
	rnf103	Ring finger protein 103. (710 aa)
	MARCHF6	Membrane associated ring-CH-type finger 6. (914 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108230540	LOC108241416	ENSKMAP00000030139	ENSKMAP00000019634	Calreticulin.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.407
LOC108230540	LOC108251406	ENSKMAP00000030139	ENSKMAP00000028402	Calreticulin.	Calnexin.	0.929
LOC108230540	clgn	ENSKMAP00000030139	ENSKMAP00000027172	Calreticulin.	Calmegin.	0.929
LOC108230540	edem1	ENSKMAP00000030139	ENSKMAP00000008308	Calreticulin.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.628
LOC108230540	ganab	ENSKMAP00000030139	ENSKMAP00000006144	Calreticulin.	Glucosidase, alpha; neutral AB; Belongs to the glycosyl hydrolase 31 family.	0.694
LOC108230540	man1b1	ENSKMAP00000030139	ENSKMAP00000003529	Calreticulin.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.407
LOC108230540	mogs	ENSKMAP00000030139	ENSKMAP00000001361	Calreticulin.	Mannosyl-oligosaccharide glucosidase.	0.669
LOC108230540	pdia3	ENSKMAP00000030139	ENSKMAP00000008872	Calreticulin.	Protein disulfide-isomerase.	0.991
LOC108230540	pdia4	ENSKMAP00000030139	ENSKMAP00000020798	Calreticulin.	Protein disulfide-isomerase A4; Belongs to the protein disulfide isomerase family.	0.931
LOC108230540	uggt1	ENSKMAP00000030139	ENSKMAP00000017040	Calreticulin.	UDP-glucose glycoprotein glucosyltransferase 1.	0.597
LOC108230540	uggt2	ENSKMAP00000030139	ENSKMAP00000022873	Calreticulin.	UDP-glucose glycoprotein glucosyltransferase 2.	0.597
LOC108232532	edem1	ENSKMAP00000016170	ENSKMAP00000008308	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.928
LOC108232532	edem3	ENSKMAP00000016170	ENSKMAP00000003592	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.902
LOC108238666	LOC108241508	ENSKMAP00000028501	ENSKMAP00000025241	RING-CH-type domain-containing protein.	Zgc:136908; Belongs to the AAA ATPase family.	0.623
LOC108238666	MARCHF6	ENSKMAP00000028501	ENSKMAP00000019643	RING-CH-type domain-containing protein.	Membrane associated ring-CH-type finger 6.	0.900
LOC108238666	SPATA5	ENSKMAP00000028501	ENSKMAP00000010734	RING-CH-type domain-containing protein.	Spermatogenesis associated 5.	0.623
LOC108238666	amfr	ENSKMAP00000028501	ENSKMAP00000024878	RING-CH-type domain-containing protein.	Autocrine motility factor receptor b.	0.680
LOC108238666	derl1	ENSKMAP00000028501	ENSKMAP00000029372	RING-CH-type domain-containing protein.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.580
LOC108238666	rnf139	ENSKMAP00000028501	ENSKMAP00000010902	RING-CH-type domain-containing protein.	Ring finger protein 139.	0.498
LOC108238666	spata5l1	ENSKMAP00000028501	ENSKMAP00000018198	RING-CH-type domain-containing protein.	Spermatogenesis associated 5-like 1.	0.623