40 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108237026	Baculoviral IAP repeat containing 2. (642 aa)
	cyld	Cylindromatosis (turban tumor syndrome), a; Belongs to the peptidase C19 family. (956 aa)
	LOC108245043	Uncharacterized protein. (259 aa)
	Map3k7	Protein kinase domain-containing protein. (117 aa)
	tnfaip3	Tumor necrosis factor, alpha-induced protein 3. (819 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	ikbkb	Inhibitor of nuclear factor kappa B kinase subunit beta. (743 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	LOC108245125	TNF superfamily member 11; Belongs to the tumor necrosis factor family. (264 aa)
	rack1	Receptor for activated C kinase 1. (317 aa)
	LOC108244062	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (504 aa)
	LOC108229597	Protein kinase domain-containing protein. (204 aa)
	tnfrsf1a	Tumor necrosis factor receptor superfamily, member 1a. (389 aa)
	tradd	Tnfrsf1a-associated via death domain. (290 aa)
	LOC108249884	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (516 aa)
	ENSKMAP00000015027	Uncharacterized protein. (87 aa)
	tab1	TGF-beta activated kinase 1/MAP3K7 binding protein 1. (507 aa)
	LOC108250625	Si:dkey-181m9.8. (701 aa)
	ubb	Uncharacterized protein. (270 aa)
	otud1	OTU deubiquitinase 1. (426 aa)
	CHUK	Component of inhibitor of nuclear factor kappa B kinase complex. (768 aa)
	LOC108231665	RanBP-type and C3HC4-type zinc finger containing 1. (517 aa)
	otud7b	OTU deubiquitinase 7B. (924 aa)
	LOC108246545	Ubiquitin carboxyl-terminal hydrolase. (600 aa)
	ripk1	Receptor (TNFRSF)-interacting serine-threonine kinase 1, like. (680 aa)
	LOC108243123	Sharpin and rbck1 related. (719 aa)
	sharpin	SHANK-associated RH domain interacting protein. (526 aa)
	xiap	X-linked inhibitor of apoptosis. (462 aa)
	LOC108230862	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (516 aa)
	LOC108238036	Ubiquitin carboxyl-terminal hydrolase. (391 aa)
	LOC108235191	Baculoviral IAP repeat containing 7. (413 aa)
	LOC108246647	Cylindromatosis (turban tumor syndrome), like; Belongs to the peptidase C19 family. (767 aa)
	spata2	Spermatogenesis associated 2. (564 aa)
	LOC108234021	Component of inhibitor of nuclear factor kappa B kinase complex. (756 aa)
	LOC108235225	Ubiquitin specific peptidase 21; Belongs to the peptidase C19 family. (336 aa)
	usp4	Ubiquitin carboxyl-terminal hydrolase. (997 aa)
	LOC108244381	Cylindromatosis (turban tumor syndrome), b. (711 aa)
	optn	Optineurin. (470 aa)
	rnf31	Uncharacterized protein. (1106 aa)
	LOC108234661	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (283 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHUK	ENSKMAP00000015027	ENSKMAP00000016900	ENSKMAP00000015027	Component of inhibitor of nuclear factor kappa B kinase complex.	Uncharacterized protein.	0.566
CHUK	LOC108229597	ENSKMAP00000016900	ENSKMAP00000009209	Component of inhibitor of nuclear factor kappa B kinase complex.	Protein kinase domain-containing protein.	0.566
CHUK	LOC108230862	ENSKMAP00000016900	ENSKMAP00000022898	Component of inhibitor of nuclear factor kappa B kinase complex.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.545
CHUK	LOC108231665	ENSKMAP00000016900	ENSKMAP00000018603	Component of inhibitor of nuclear factor kappa B kinase complex.	RanBP-type and C3HC4-type zinc finger containing 1.	0.469
CHUK	LOC108234021	ENSKMAP00000016900	ENSKMAP00000024921	Component of inhibitor of nuclear factor kappa B kinase complex.	Component of inhibitor of nuclear factor kappa B kinase complex.	0.941
CHUK	LOC108235191	ENSKMAP00000016900	ENSKMAP00000023582	Component of inhibitor of nuclear factor kappa B kinase complex.	Baculoviral IAP repeat containing 7.	0.542
CHUK	LOC108237026	ENSKMAP00000016900	ENSKMAP00000030128	Component of inhibitor of nuclear factor kappa B kinase complex.	Baculoviral IAP repeat containing 2.	0.542
CHUK	LOC108243123	ENSKMAP00000016900	ENSKMAP00000020502	Component of inhibitor of nuclear factor kappa B kinase complex.	Sharpin and rbck1 related.	0.469
CHUK	LOC108244062	ENSKMAP00000016900	ENSKMAP00000007871	Component of inhibitor of nuclear factor kappa B kinase complex.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.545
CHUK	LOC108244381	ENSKMAP00000016900	ENSKMAP00000028531	Component of inhibitor of nuclear factor kappa B kinase complex.	Cylindromatosis (turban tumor syndrome), b.	0.565
CHUK	LOC108245043	ENSKMAP00000016900	ENSKMAP00000001555	Component of inhibitor of nuclear factor kappa B kinase complex.	Uncharacterized protein.	0.954
CHUK	LOC108246647	ENSKMAP00000016900	ENSKMAP00000024066	Component of inhibitor of nuclear factor kappa B kinase complex.	Cylindromatosis (turban tumor syndrome), like; Belongs to the peptidase C19 family.	0.565
CHUK	LOC108249884	ENSKMAP00000016900	ENSKMAP00000013867	Component of inhibitor of nuclear factor kappa B kinase complex.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.545
CHUK	LOC108250625	ENSKMAP00000016900	ENSKMAP00000016079	Component of inhibitor of nuclear factor kappa B kinase complex.	Si:dkey-181m9.8.	0.575
CHUK	Map3k7	ENSKMAP00000016900	ENSKMAP00000003739	Component of inhibitor of nuclear factor kappa B kinase complex.	Protein kinase domain-containing protein.	0.954
CHUK	cyld	ENSKMAP00000016900	ENSKMAP00000001122	Component of inhibitor of nuclear factor kappa B kinase complex.	Cylindromatosis (turban tumor syndrome), a; Belongs to the peptidase C19 family.	0.565
CHUK	ikbkb	ENSKMAP00000016900	ENSKMAP00000005245	Component of inhibitor of nuclear factor kappa B kinase complex.	Inhibitor of nuclear factor kappa B kinase subunit beta.	0.951
CHUK	optn	ENSKMAP00000016900	ENSKMAP00000029005	Component of inhibitor of nuclear factor kappa B kinase complex.	Optineurin.	0.717
CHUK	rack1	ENSKMAP00000016900	ENSKMAP00000006708	Component of inhibitor of nuclear factor kappa B kinase complex.	Receptor for activated C kinase 1.	0.521
CHUK	ripk1	ENSKMAP00000016900	ENSKMAP00000020156	Component of inhibitor of nuclear factor kappa B kinase complex.	Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.	0.967