80 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCBTB1	RCC1 and BTB domain containing protein 1. (531 aa)
	rfc5	Replication factor C (activator 1) 5. (339 aa)
	LOC108251500	Uncharacterized protein. (557 aa)
	rev1	REV1 DNA directed polymerase. (1363 aa)
	pold1	DNA polymerase. (1105 aa)
	LOC108245251	Bloodthirsty-related gene family, member 12. (570 aa)
	ENSKMAP00000014049	Si:dkey-46i9.6. (539 aa)
	pole2	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (528 aa)
	ENSKMAP00000014222	B30.2/SPRY domain-containing protein. (214 aa)
	LOC108245284	Uncharacterized protein. (544 aa)
	LOC108245285	B30.2/SPRY domain-containing protein. (498 aa)
	LOC108244139	Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (531 aa)
	ENSKMAP00000015259	Uncharacterized protein. (244 aa)
	kxd1	KxDL motif containing 1. (185 aa)
	ENSKMAP00000015730	B30.2/SPRY domain-containing protein. (218 aa)
	polk	Polymerase (DNA directed) kappa. (401 aa)
	ubb	Uncharacterized protein. (270 aa)
	LOC108236237	Ubiquitin specific peptidase 43b; Belongs to the peptidase C19 family. (1225 aa)
	LOC108228281	Uncharacterized protein. (545 aa)
	LOC108244200	Uncharacterized protein. (549 aa)
	rpa2	RPA_C domain-containing protein. (274 aa)
	LOC108237118	USP domain-containing protein; Belongs to the peptidase C19 family. (1308 aa)
	LOC108233798	FinTRIM family, member 82. (568 aa)
	rpa3	Replication protein A 14kDa subunit. (122 aa)
	Pole	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (298 aa)
	ENSKMAP00000020750	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (314 aa)
	ENSKMAP00000021046	Uncharacterized protein. (233 aa)
	LOC108245383	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (154 aa)
	pold3	Polymerase (DNA-directed), delta 3, accessory subunit. (440 aa)
	LOC108247206	Uncharacterized protein. (552 aa)
	pclaf	PCNA clamp associated factor. (116 aa)
	LOC108228504	Uncharacterized protein. (544 aa)
	ENSKMAP00000024416	Uncharacterized protein. (425 aa)
	LOC108232228	Uncharacterized protein. (405 aa)
	polh	Polymerase (DNA directed), eta. (738 aa)
	LOC108243733	Ubiquitin specific peptidase 31; Belongs to the peptidase C19 family. (1290 aa)
	atad5	ATPase family AAA domain containing 5a. (1804 aa)
	pole4	Polymerase (DNA-directed), epsilon 4, accessory subunit. (130 aa)
	LOC108230590	SCY domain-containing protein. (122 aa)
	ENSKMAP00000001807	Uncharacterized protein. (498 aa)
	usp43	Ubiquitin specific peptidase 43a; Belongs to the peptidase C19 family. (1217 aa)
	ENSKMAP00000000933	Uncharacterized protein. (205 aa)
	ENSKMAP00000000485	B30.2/SPRY domain-containing protein. (227 aa)
	RPA1	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (607 aa)
	ENSKMAP00000000203	Uncharacterized protein. (427 aa)
	rfc1	Replication factor C subunit 1. (1180 aa)
	rfc4	Replication factor C (activator 1) 4. (388 aa)
	rfc3	Replication factor C (activator 1) 3. (356 aa)
	rpa1	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (610 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	LOC108229485	Uncharacterized protein. (544 aa)
	ENSKMAP00000006301	Ig-like domain-containing protein. (186 aa)
	ENSKMAP00000006266	Uncharacterized protein. (271 aa)
	rcbtb2	Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (527 aa)
	ENSKMAP00000005891	Uncharacterized protein. (271 aa)
	LOC108249736	Uncharacterized protein. (556 aa)
	ENSKMAP00000005758	Uncharacterized protein. (548 aa)
	LOC108243241	FinTRIM family, member 14-like. (514 aa)
	LOC108248617	Uncharacterized protein. (544 aa)
	ENSKMAP00000004172	Uncharacterized protein. (545 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	pcna	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
	pold2	Polymerase (DNA directed), delta 2, regulatory subunit. (471 aa)
	LOC108241679	FinTRIM family, member 67. (456 aa)
	LOC108241677	Uncharacterized protein. (562 aa)
	ENSKMAP00000003283	Uncharacterized protein. (419 aa)
	LOC108246189	Uncharacterized protein. (436 aa)
	pole3	CBFD_NFYB_HMF domain-containing protein. (153 aa)
	rfc2	Replication factor C (activator 1) 2. (357 aa)
	poli	Polymerase (DNA directed) iota. (716 aa)
	pold4	Uncharacterized protein. (110 aa)
	LOC108251717	Uncharacterized protein. (550 aa)
	LOC108247506	Uncharacterized protein. (594 aa)
	LOC108248126	RPA_C domain-containing protein. (199 aa)
	ENSKMAP00000009683	Tripartite motif containing 25, like. (456 aa)
	ENSKMAP00000009313	Methionine sulfoxide reductase B1b. (467 aa)
	usp10	Ubiquitin carboxyl-terminal hydrolase. (874 aa)
	LOC108237813	Uncharacterized protein. (544 aa)
	ENSKMAP00000008746	Uncharacterized protein. (453 aa)
	LOC108242873	Uncharacterized protein. (540 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSKMAP00000000203	ubb	ENSKMAP00000000203	ENSKMAP00000016559	Uncharacterized protein.	Uncharacterized protein.	0.408
ENSKMAP00000000485	ubb	ENSKMAP00000000485	ENSKMAP00000016559	B30.2/SPRY domain-containing protein.	Uncharacterized protein.	0.408
ENSKMAP00000000933	ubb	ENSKMAP00000000933	ENSKMAP00000016559	Uncharacterized protein.	Uncharacterized protein.	0.408
ENSKMAP00000001807	ubb	ENSKMAP00000001807	ENSKMAP00000016559	Uncharacterized protein.	Uncharacterized protein.	0.408
ENSKMAP00000003283	ubb	ENSKMAP00000003283	ENSKMAP00000016559	Uncharacterized protein.	Uncharacterized protein.	0.408
ENSKMAP00000004172	ubb	ENSKMAP00000004172	ENSKMAP00000016559	Uncharacterized protein.	Uncharacterized protein.	0.408
ENSKMAP00000005758	ubb	ENSKMAP00000005758	ENSKMAP00000016559	Uncharacterized protein.	Uncharacterized protein.	0.408
ENSKMAP00000005891	ubb	ENSKMAP00000005891	ENSKMAP00000016559	Uncharacterized protein.	Uncharacterized protein.	0.408
ENSKMAP00000006266	ubb	ENSKMAP00000006266	ENSKMAP00000016559	Uncharacterized protein.	Uncharacterized protein.	0.408
ENSKMAP00000006301	ubb	ENSKMAP00000006301	ENSKMAP00000016559	Ig-like domain-containing protein.	Uncharacterized protein.	0.408
ENSKMAP00000008746	ubb	ENSKMAP00000008746	ENSKMAP00000016559	Uncharacterized protein.	Uncharacterized protein.	0.408
ENSKMAP00000009313	ENSKMAP00000020750	ENSKMAP00000009313	ENSKMAP00000020750	Methionine sulfoxide reductase B1b.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.646
ENSKMAP00000009313	LOC108230590	ENSKMAP00000009313	ENSKMAP00000030168	Methionine sulfoxide reductase B1b.	SCY domain-containing protein.	0.432
ENSKMAP00000009313	LOC108248126	ENSKMAP00000009313	ENSKMAP00000010056	Methionine sulfoxide reductase B1b.	RPA_C domain-containing protein.	0.789
ENSKMAP00000009313	Pole	ENSKMAP00000009313	ENSKMAP00000020703	Methionine sulfoxide reductase B1b.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.646
ENSKMAP00000009313	atad5	ENSKMAP00000009313	ENSKMAP00000028595	Methionine sulfoxide reductase B1b.	ATPase family AAA domain containing 5a.	0.733
ENSKMAP00000009313	pcna	ENSKMAP00000009313	ENSKMAP00000003800	Methionine sulfoxide reductase B1b.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.881
ENSKMAP00000009313	pold1	ENSKMAP00000009313	ENSKMAP00000013397	Methionine sulfoxide reductase B1b.	DNA polymerase.	0.787
ENSKMAP00000009313	pold2	ENSKMAP00000009313	ENSKMAP00000003731	Methionine sulfoxide reductase B1b.	Polymerase (DNA directed), delta 2, regulatory subunit.	0.605
ENSKMAP00000009313	pole2	ENSKMAP00000009313	ENSKMAP00000014071	Methionine sulfoxide reductase B1b.	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	0.665