STRINGSTRING
parp3 parp3 cul4b cul4b YY1 YY1 ino80b ino80b LOC108245429 LOC108245429 cops3 cops3 ddb1 ddb1 xpc xpc rps27a rps27a LOC108251554 LOC108251554 cops2 cops2 tfpt tfpt ddb2 ddb2 ruvbl1 ruvbl1 ino80 ino80 COPS6 COPS6 cetn3 cetn3 parp2 parp2 wdr76 wdr76 mcrs1 mcrs1 ino80d ino80d parp1 parp1 actb actb gps1 gps1 RAD23B RAD23B rbx1 rbx1 ubb ubb actr5 actr5 uba52 uba52 vwa5b2 vwa5b2 ino80c ino80c kxd1 kxd1 LOC108236794 LOC108236794 rpap3 rpap3 cops8 cops8 cops5 cops5 LOC108236604 LOC108236604 LOC108244554 LOC108244554 cops7a cops7a rad23a rad23a ino80e ino80e cops4 cops4 LOC108245850 LOC108245850 actr8 actr8 nfrkb nfrkb LOC108229807 LOC108229807
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
parp3Poly [ADP-ribose] polymerase. (530 aa)
cul4bCullin 4B; Belongs to the cullin family. (869 aa)
YY1YY1 transcription factor b. (368 aa)
ino80bINO80 complex subunit B. (335 aa)
LOC108245429Uncharacterized protein. (484 aa)
cops3COP9 signalosome subunit 3. (423 aa)
ddb1Damage-specific DNA binding protein 1. (1075 aa)
xpcXeroderma pigmentosum, complementation group C. (935 aa)
rps27aRibosomal protein S27a. (156 aa)
LOC108251554Si:ch73-290k24.6. (783 aa)
cops2COP9 signalosome subunit 2. (443 aa)
tfptTCF3 (E2A) fusion partner. (197 aa)
ddb2Damage-specific DNA binding protein 2. (497 aa)
ruvbl1RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (456 aa)
ino80INO80 complex ATPase subunit. (1474 aa)
COPS6COP9 signalosome subunit 6. (316 aa)
cetn3Centrin 3. (172 aa)
parp2Poly [ADP-ribose] polymerase. (655 aa)
wdr76WD repeat-containing protein 76; Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC. Belongs to the WD repeat DDB2/WDR76 family. (575 aa)
mcrs1Microspherule protein 1. (466 aa)
ino80dINO80 complex subunit Da. (1000 aa)
parp1Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1015 aa)
actbUncharacterized protein. (375 aa)
gps1G protein pathway suppressor 1. (487 aa)
RAD23BRAD23 homolog B, nucleotide excision repair protein. (396 aa)
rbx1Ring-box 1, E3 ubiquitin protein ligase. (108 aa)
ubbUncharacterized protein. (270 aa)
actr5Actin related protein 5; Belongs to the actin family. (642 aa)
uba52Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
vwa5b2Von Willebrand factor A domain containing 5B2. (1143 aa)
ino80cINO80 complex subunit C. (207 aa)
kxd1KxDL motif containing 1. (185 aa)
LOC108236794YY1 transcription factor. (346 aa)
rpap3RNA polymerase II associated protein 3. (650 aa)
cops8COP9 signalosome subunit 8. (191 aa)
cops5COP9 signalosome subunit 5. (334 aa)
LOC108236604Centrin 4. (173 aa)
LOC108244554Uncharacterized protein. (375 aa)
cops7aCOP9 constitutive photomorphogenic homolog subunit 7A. (268 aa)
rad23aRAD23 homolog A, nucleotide excision repair protein a. (365 aa)
ino80eINO80 complex subunit E. (250 aa)
cops4COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis). (406 aa)
LOC108245850Uncharacterized protein. (375 aa)
actr8Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily. (643 aa)
nfrkbNuclear factor related to kappaB binding protein. (1278 aa)
LOC108229807Cullin 4A; Belongs to the cullin family. (746 aa)
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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