46 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108229807	Cullin 4A; Belongs to the cullin family. (746 aa)
	ddb2	Damage-specific DNA binding protein 2. (497 aa)
	mcrs1	Microspherule protein 1. (466 aa)
	ino80d	INO80 complex subunit Da. (1000 aa)
	ruvbl1	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (456 aa)
	ino80	INO80 complex ATPase subunit. (1474 aa)
	COPS6	COP9 signalosome subunit 6. (316 aa)
	actb	Uncharacterized protein. (375 aa)
	gps1	G protein pathway suppressor 1. (487 aa)
	RAD23B	RAD23 homolog B, nucleotide excision repair protein. (396 aa)
	rbx1	Ring-box 1, E3 ubiquitin protein ligase. (108 aa)
	ubb	Uncharacterized protein. (270 aa)
	actr5	Actin related protein 5; Belongs to the actin family. (642 aa)
	parp1	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1015 aa)
	cetn3	Centrin 3. (172 aa)
	parp2	Poly [ADP-ribose] polymerase. (655 aa)
	wdr76	WD repeat-containing protein 76; Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC. Belongs to the WD repeat DDB2/WDR76 family. (575 aa)
	actr8	Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily. (643 aa)
	LOC108245850	Uncharacterized protein. (375 aa)
	cops4	COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis). (406 aa)
	ino80e	INO80 complex subunit E. (250 aa)
	rad23a	RAD23 homolog A, nucleotide excision repair protein a. (365 aa)
	cops7a	COP9 constitutive photomorphogenic homolog subunit 7A. (268 aa)
	LOC108244554	Uncharacterized protein. (375 aa)
	LOC108236604	Centrin 4. (173 aa)
	cops5	COP9 signalosome subunit 5. (334 aa)
	cops8	COP9 signalosome subunit 8. (191 aa)
	rpap3	RNA polymerase II associated protein 3. (650 aa)
	LOC108236794	YY1 transcription factor. (346 aa)
	kxd1	KxDL motif containing 1. (185 aa)
	ino80c	INO80 complex subunit C. (207 aa)
	vwa5b2	Von Willebrand factor A domain containing 5B2. (1143 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	tfpt	TCF3 (E2A) fusion partner. (197 aa)
	cops2	COP9 signalosome subunit 2. (443 aa)
	LOC108251554	Si:ch73-290k24.6. (783 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	xpc	Xeroderma pigmentosum, complementation group C. (935 aa)
	ddb1	Damage-specific DNA binding protein 1. (1075 aa)
	cops3	COP9 signalosome subunit 3. (423 aa)
	LOC108245429	Uncharacterized protein. (484 aa)
	ino80b	INO80 complex subunit B. (335 aa)
	YY1	YY1 transcription factor b. (368 aa)
	cul4b	Cullin 4B; Belongs to the cullin family. (869 aa)
	nfrkb	Nuclear factor related to kappaB binding protein. (1278 aa)
	parp3	Poly [ADP-ribose] polymerase. (530 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COPS6	LOC108229807	ENSKMAP00000025749	ENSKMAP00000029593	COP9 signalosome subunit 6.	Cullin 4A; Belongs to the cullin family.	0.895
COPS6	LOC108236604	ENSKMAP00000025749	ENSKMAP00000010848	COP9 signalosome subunit 6.	Centrin 4.	0.487
COPS6	LOC108236794	ENSKMAP00000025749	ENSKMAP00000008423	COP9 signalosome subunit 6.	YY1 transcription factor.	0.407
COPS6	RAD23B	ENSKMAP00000025749	ENSKMAP00000020553	COP9 signalosome subunit 6.	RAD23 homolog B, nucleotide excision repair protein.	0.687
COPS6	YY1	ENSKMAP00000025749	ENSKMAP00000000693	COP9 signalosome subunit 6.	YY1 transcription factor b.	0.407
COPS6	actr5	ENSKMAP00000025749	ENSKMAP00000016359	COP9 signalosome subunit 6.	Actin related protein 5; Belongs to the actin family.	0.459
COPS6	actr8	ENSKMAP00000025749	ENSKMAP00000015348	COP9 signalosome subunit 6.	Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily.	0.484
COPS6	cetn3	ENSKMAP00000025749	ENSKMAP00000024923	COP9 signalosome subunit 6.	Centrin 3.	0.487
COPS6	cops2	ENSKMAP00000025749	ENSKMAP00000005030	COP9 signalosome subunit 6.	COP9 signalosome subunit 2.	0.999
COPS6	cops3	ENSKMAP00000025749	ENSKMAP00000001684	COP9 signalosome subunit 6.	COP9 signalosome subunit 3.	0.999
COPS6	cops4	ENSKMAP00000025749	ENSKMAP00000013167	COP9 signalosome subunit 6.	COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis).	0.999
COPS6	cops5	ENSKMAP00000025749	ENSKMAP00000010722	COP9 signalosome subunit 6.	COP9 signalosome subunit 5.	0.999
COPS6	cops7a	ENSKMAP00000025749	ENSKMAP00000011912	COP9 signalosome subunit 6.	COP9 constitutive photomorphogenic homolog subunit 7A.	0.998
COPS6	cops8	ENSKMAP00000025749	ENSKMAP00000010301	COP9 signalosome subunit 6.	COP9 signalosome subunit 8.	0.999
COPS6	cul4b	ENSKMAP00000025749	ENSKMAP00000000480	COP9 signalosome subunit 6.	Cullin 4B; Belongs to the cullin family.	0.895
COPS6	ddb1	ENSKMAP00000025749	ENSKMAP00000003119	COP9 signalosome subunit 6.	Damage-specific DNA binding protein 1.	0.917
COPS6	ddb2	ENSKMAP00000025749	ENSKMAP00000027206	COP9 signalosome subunit 6.	Damage-specific DNA binding protein 2.	0.872
COPS6	gps1	ENSKMAP00000025749	ENSKMAP00000020748	COP9 signalosome subunit 6.	G protein pathway suppressor 1.	0.999
COPS6	mcrs1	ENSKMAP00000025749	ENSKMAP00000022374	COP9 signalosome subunit 6.	Microspherule protein 1.	0.469
COPS6	rad23a	ENSKMAP00000025749	ENSKMAP00000012094	COP9 signalosome subunit 6.	RAD23 homolog A, nucleotide excision repair protein a.	0.687