STRINGSTRING
rpl15 rpl15 dis3 dis3 rpl11 rpl11 rplp0 rplp0 rpl24 rpl24 rps6 rps6 rpl9 rpl9 rcl1 rcl1 rpl18 rpl18 ltv1 ltv1 Rpp25l Rpp25l LOC108243419 LOC108243419 RPS20 RPS20 RPL19 RPL19 rpl37 rpl37 rpl28 rpl28 rpl29 rpl29 ebna1bp2 ebna1bp2 ENSKMAP00000014454 ENSKMAP00000014454 RPS19 RPS19 imp4 imp4 exosc6 exosc6 RPL7A RPL7A rps3 rps3 eri2 eri2 exosc5 exosc5 wdr43 wdr43 LOC108245817 LOC108245817 rpl12 rpl12 rpl21 rpl21 rpl13a rpl13a rplp1 rplp1 rpl36 rpl36 rps21 rps21 snu13 snu13 utp25 utp25 ENSKMAP00000011535 ENSKMAP00000011535 Heatr1 Heatr1 rpl38 rpl38 Rpl35 Rpl35 ncl ncl dis3l2 dis3l2 rpl30 rpl30 rpl27 rpl27 LOC108237811 LOC108237811 riok3 riok3 emg1 emg1 LOC108242308 LOC108242308 rrp36 rrp36 rpl7 rpl7 LOC108242300 LOC108242300 rrp9 rrp9 LOC108245716 LOC108245716 rtca rtca rpl13 rpl13 LOC108228862 LOC108228862 ENSKMAP00000030174 ENSKMAP00000030174 ddx52 ddx52 rpl23a rpl23a ftsj3 ftsj3 bms1 bms1 LOC108235881 LOC108235881 rpl14 rpl14 utp6 utp6 rps15a rps15a bysl bysl LOC108237496 LOC108237496 ENSKMAP00000028580 ENSKMAP00000028580 LOC108251414 LOC108251414 gnl3l gnl3l ddx21 ddx21 bud23 bud23 rpl39 rpl39 exosc9 exosc9 tbl3 tbl3 rps2 rps2 LOC108231389 LOC108231389 RPS29 RPS29 rpl4 rpl4 rps26 rps26 nop56 nop56 riok1 riok1 rpp40 rpp40 rpl37a rpl37a LOC108242189 LOC108242189 Rpl31 Rpl31 rps16 rps16 krr1 krr1 rps12 rps12 LOC108235333 LOC108235333 mtrex mtrex rsad1 rsad1 noc4l noc4l exosc7 exosc7 rps5 rps5 ddx47 ddx47 riok2 riok2 rbm28 rbm28 LOC108247624 LOC108247624 rpl35a rpl35a rrp7a rrp7a utp18 utp18 eri1 eri1 rpl7l1 rpl7l1 nol12 nol12 csnk1d csnk1d rps18 rps18 dis3l dis3l csnk1e csnk1e LOC108238394 LOC108238394 RPS4X RPS4X rexo4 rexo4 c1d c1d nop14 nop14 pes1 pes1 wdr36 wdr36 rpp30 rpp30 exosc4 exosc4 wdr46 wdr46 exosc10 exosc10 LOC108231561 LOC108231561 rps28 rps28 rpl23 rpl23 rps15 rps15 wdr3 wdr3 wdr75 wdr75 rpl17 rpl17 mphosph6 mphosph6 rps10 rps10 LOC108228438 LOC108228438 ISG20L2 ISG20L2 nol11 nol11 RPL19-2 RPL19-2 rpl32 rpl32 LOC108240242 LOC108240242 exosc2 exosc2 rpl22l1 rpl22l1 rps17 rps17 ENSKMAP00000023671 ENSKMAP00000023671 LOC108231506 LOC108231506 ENSKMAP00000024225 ENSKMAP00000024225 rps24 rps24 pno1 pno1 LOC108229563 LOC108229563 utp20 utp20 rps13 rps13 gnl3 gnl3 kxd1 kxd1 tsr1 tsr1 LOC108232336 LOC108232336 Crebzf Crebzf exosc8 exosc8 rps9 rps9 rpl8 rpl8 rpl10 rpl10 tex10 tex10 ddx49 ddx49 utp3 utp3 rpl34 rpl34 nol6 nol6 utp15 utp15 rps3a rps3a LOC108248406 LOC108248406 rpl18a rpl18a utp11 utp11 LOC108251282 LOC108251282 ngdn ngdn nip7 nip7 RPS11 RPS11 rps23 rps23 rps8 rps8 exosc3 exosc3 nob1 nob1 ddx28 ddx28 LOC108236066 LOC108236066 Rpp38 Rpp38 LOC108246265 LOC108246265 rpl6 rpl6 fbl fbl dhx37 dhx37 utp4 utp4 RPL5-2 RPL5-2 UTP14C UTP14C LOC108250319 LOC108250319 rps27a rps27a LOC108244507 LOC108244507 nol9 nol9 RPL27A RPL27A Skiv2l Skiv2l dcaf13 dcaf13 LOC108250885 LOC108250885 RPL5 RPL5 ENSKMAP00000002718 ENSKMAP00000002718 fcf1 fcf1 LOC108241091 LOC108241091 imp3 imp3 LOC108234760 LOC108234760 bop1 bop1 LOC108250873 LOC108250873 mphosph10 mphosph10 rps14 rps14 exosc1 exosc1 ENSKMAP00000001462 ENSKMAP00000001462 ENSKMAP00000001406 ENSKMAP00000001406 rps25 rps25 wdr12 wdr12 nop58 nop58
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpl15Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
dis3DIS3 exosome endoribonuclease and 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family. (945 aa)
rpl11Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family. (178 aa)
rplp060S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (314 aa)
rpl24Ribosomal protein L24. (157 aa)
rps640S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (249 aa)
rpl9Ribosomal protein L9. (193 aa)
rcl1RNA terminal phosphate cyclase-like 1. (372 aa)
rpl18Ribosomal protein L18. (188 aa)
ltv1LTV1 ribosome biogenesis factor. (473 aa)
Rpp25lRibonuclease P/MRP 25 subunit-like. (207 aa)
LOC108243419Ribonuclease P 21 subunit. (160 aa)
RPS20Ribosomal protein S20. (183 aa)
RPL19Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (196 aa)
rpl37Ribosomal protein L37; Binds to the 23S rRNA. (97 aa)
rpl28Ribosomal protein L28. (137 aa)
rpl2960S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (64 aa)
ebna1bp2EBNA1 binding protein 2. (305 aa)
ENSKMAP0000001445440S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (99 aa)
RPS19Ribosomal protein S19. (152 aa)
imp4IMP U3 small nucleolar ribonucleoprotein 4. (291 aa)
exosc6Exosome component 6. (269 aa)
RPL7ARibosomal protein L7a. (274 aa)
rps3Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (245 aa)
eri2ERI1 exoribonuclease family member 2. (702 aa)
exosc5Exosome component 5. (219 aa)
wdr43WD repeat domain 43. (652 aa)
LOC108245817Ribosomal protein L26. (145 aa)
rpl12Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (165 aa)
rpl21Ribosomal protein L21. (160 aa)
rpl13aRibosomal protein L13a; Belongs to the universal ribosomal protein uL13 family. (205 aa)
rplp1Ribosomal protein, large, P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (113 aa)
rpl3660S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (127 aa)
rps2140S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (83 aa)
snu13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
utp25UTP25 small subunit processor component. (824 aa)
ENSKMAP00000011535Uncharacterized protein. (72 aa)
Heatr1BP28CT domain-containing protein. (356 aa)
rpl38Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (70 aa)
Rpl35Ribosomal protein L35. (117 aa)
nclNucleolin. (695 aa)
dis3l2DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily. (965 aa)
rpl30Ribosomal protein L30. (116 aa)
rpl2760S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (136 aa)
LOC108237811Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (386 aa)
riok3Serine/threonine-protein kinase RIO3; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (504 aa)
emg1EMG1 N1-specific pseudouridine methyltransferase. (238 aa)
LOC108242308SUMO specific peptidase 3b. (528 aa)
rrp36Ribosomal RNA processing 36. (346 aa)
rpl7Ribosomal protein L7. (245 aa)
LOC108242300Proline, glutamate and leucine rich protein 1. (1264 aa)
rrp9Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein. (480 aa)
LOC108245716Interferon stimulated exonuclease gene. (347 aa)
rtcaRNA 3'-terminal phosphate cyclase. (366 aa)
rpl1360S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (211 aa)
LOC108228862WD repeat domain 18. (350 aa)
ENSKMAP0000003017440S ribosomal protein S27. (93 aa)
ddx52DEAD (Asp-Glu-Ala-Asp) box polypeptide 52. (681 aa)
rpl23aRibosomal protein L23a; Belongs to the universal ribosomal protein uL23 family. (155 aa)
ftsj3pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (853 aa)
bms1BMS1 ribosome biogenesis factor. (791 aa)
LOC108235881Casein kinase 1, epsilon; Belongs to the protein kinase superfamily. (440 aa)
rpl14Ribosomal protein L14. (179 aa)
utp6UTP6 small subunit processome component. (595 aa)
rps15aRibosomal protein S15a; Belongs to the universal ribosomal protein uS8 family. (130 aa)
byslBystin-like. (439 aa)
LOC108237496Zona pellucida glycoprotein d. (398 aa)
ENSKMAP00000028580Programmed cell death 11. (901 aa)
LOC108251414Methyltransf_25 domain-containing protein. (237 aa)
gnl3lGuanine nucleotide binding protein-like 3 (nucleolar)-like. (563 aa)
ddx21DEAD (Asp-Glu-Ala-Asp) box helicase 21. (754 aa)
bud23BUD23 rRNA methyltransferase and ribosome maturation factor. (282 aa)
rpl39Ribosomal protein L39. (75 aa)
exosc9Exosome component 9. (425 aa)
tbl3Transducin (beta)-like 3. (898 aa)
rps2Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (279 aa)
LOC108231389Ribosomal protein L36A; Belongs to the eukaryotic ribosomal protein eL42 family. (106 aa)
RPS29Ribosomal protein S29. (56 aa)
rpl4Ribosomal protein L4. (369 aa)
rps2640S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (138 aa)
nop56NOP56 ribonucleoprotein homolog. (560 aa)
riok1RIO kinase 1 (yeast). (383 aa)
rpp40Ribonuclease P/MRP 40 subunit. (349 aa)
rpl37aUncharacterized protein. (110 aa)
LOC10824218940S ribosomal protein S27. (84 aa)
Rpl31Ribosomal protein L31. (135 aa)
rps16Ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (146 aa)
krr1KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (383 aa)
rps1240S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (139 aa)
LOC108235333Ribosomal protein S19. (146 aa)
mtrexMtr4 exosome RNA helicase. (1034 aa)
rsad1Radical S-adenosyl methionine domain-containing protein; May be a heme chaperone, appears to bind heme. Homologous bacterial proteins do not have oxygen-independent coproporphyrinogen- III oxidase activity. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L- methionine; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (474 aa)
noc4lNucleolar complex associated 4 homolog. (525 aa)
exosc7Exosome component 7. (291 aa)
rps5Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (203 aa)
ddx47DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family. (491 aa)
riok2RIO kinase 2 (yeast). (511 aa)
rbm28RNA binding motif protein 28. (752 aa)
LOC108247624Premelanosome protein b. (618 aa)
rpl35aRibosomal protein L35a. (110 aa)
rrp7aRibosomal RNA processing 7 homolog A. (304 aa)
utp18WD_REPEATS_REGION domain-containing protein. (533 aa)
eri1Exoribonuclease 1. (339 aa)
rpl7l1Ribosomal protein L7-like 1. (250 aa)
nol12Nucleolar protein 12. (227 aa)
csnk1dCasein kinase 1, delta b; Belongs to the protein kinase superfamily. (405 aa)
rps18Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family. (152 aa)
dis3lDIS3 like exosome 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family. (1041 aa)
csnk1eProtein kinase domain-containing protein; Belongs to the protein kinase superfamily. (417 aa)
LOC108238394Usher syndrome 1C binding protein 1. (689 aa)
RPS4XRibosomal protein S4 X-linked. (108 aa)
rexo4REX4 homolog, 3'-5' exonuclease. (415 aa)
c1dC1D nuclear receptor corepressor. (157 aa)
nop14NOP14 nucleolar protein homolog (yeast). (868 aa)
pes1Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (581 aa)
wdr36WD repeat domain 36. (670 aa)
rpp30Ribonuclease P/MRP 30 subunit. (267 aa)
exosc4Exosome component 4. (245 aa)
wdr46WD repeat domain 46. (595 aa)
exosc10Exosome component 10. (886 aa)
LOC108231561Ribosomal protein, large P2; Belongs to the eukaryotic ribosomal protein P1/P2 family. (115 aa)
rps28Ribosomal protein S28. (69 aa)
rpl23Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family. (140 aa)
rps15Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (145 aa)
wdr3WD repeat domain 3. (931 aa)
wdr75WD repeat domain 75. (848 aa)
rpl17Ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family. (184 aa)
mphosph6M-phase phosphoprotein 6. (161 aa)
rps10Ribosomal protein S10. (166 aa)
LOC108228438WD_REPEATS_REGION domain-containing protein. (152 aa)
ISG20L2Interferon stimulated exonuclease gene 20 like 2. (331 aa)
nol11Nucleolar protein 11. (725 aa)
RPL19-2Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (195 aa)
rpl32Ribosomal protein L32. (135 aa)
LOC108240242Ribonuclease P and MRP subunit p25, b. (240 aa)
exosc2Exosome component 2. (290 aa)
rpl22l1Ribosomal protein L22-like 1. (129 aa)
rps17Uncharacterized protein. (181 aa)
ENSKMAP00000023671Uncharacterized protein. (101 aa)
LOC108231506Ribosomal protein L22. (177 aa)
ENSKMAP00000024225Si:dkey-159f12.2. (169 aa)
rps2440S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (132 aa)
pno1Partner of NOB1 homolog. (250 aa)
LOC108229563Ribosomal protein S4 X-linked. (203 aa)
utp20UTP20 small subunit processome component. (2613 aa)
rps13Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (148 aa)
gnl3Guanine nucleotide binding protein-like 3 (nucleolar). (547 aa)
kxd1KxDL motif containing 1. (185 aa)
tsr1TSR1 ribosome maturation factor. (833 aa)
LOC108232336Ribosomal RNA processing 1. (680 aa)
CrebzfCREB/ATF bZIP transcription factor. (205 aa)
exosc8Exosome component 8. (277 aa)
rps9Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (194 aa)
rpl8Ribosomal protein L8. (267 aa)
rpl10Ribosomal protein L10. (215 aa)
tex10Testis expressed 10. (941 aa)
ddx49DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family. (479 aa)
utp3UTP3 small subunit processome component. (478 aa)
rpl34Ribosomal protein L34. (117 aa)
nol6Nucleolar protein 6. (1150 aa)
utp15UTP15 small subunit processome component. (529 aa)
rps3a40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (266 aa)
LOC108248406Methyltransferase like 27. (227 aa)
rpl18a60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (176 aa)
utp11U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (254 aa)
LOC108251282Uncharacterized protein. (582 aa)
ngdnNeuroguidin, EIF4E binding protein. (325 aa)
nip760S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (180 aa)
RPS11Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family. (205 aa)
rps23Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (143 aa)
rps840S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (213 aa)
exosc3Exosome component 3. (244 aa)
nob1RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family. (479 aa)
ddx28DEAD (Asp-Glu-Ala-Asp) box polypeptide 28. (565 aa)
LOC10823606640S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Belongs to the universal ribosomal protein uS2 family. (309 aa)
Rpp38Ribonuclease P/MRP 38 subunit. (287 aa)
LOC108246265Glomulin, FKBP associated protein b. (566 aa)
rpl6Ribosomal protein L6. (259 aa)
fblFibrillarin. (309 aa)
dhx37DEAH (Asp-Glu-Ala-His) box polypeptide 37. (1153 aa)
utp4UTP4 small subunit processome component. (688 aa)
RPL5-2Ribosomal protein L5b. (297 aa)
UTP14CUTP14C small subunit processome component. (699 aa)
LOC108250319PWP2 small subunit processome component. (909 aa)
rps27aRibosomal protein S27a. (156 aa)
LOC108244507Uncharacterized protein. (458 aa)
nol9Nucleolar protein 9. (700 aa)
RPL27ARibosomal protein L27a; Belongs to the universal ribosomal protein uL15 family. (137 aa)
Skiv2lUncharacterized protein. (92 aa)
dcaf13Ddb1 and cul4 associated factor 13. (445 aa)
LOC108250885Ribosomal protein L22. (130 aa)
RPL5Ribosomal protein L5. (298 aa)
ENSKMAP00000002718XRN_N domain-containing protein. (100 aa)
fcf1FCF1 rRNA-processing protein. (198 aa)
LOC10824109140S ribosomal protein S27. (84 aa)
imp3IMP U3 small nucleolar ribonucleoprotein 3. (183 aa)
LOC108234760Uncharacterized protein. (134 aa)
bop1Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (747 aa)
LOC108250873Ribosomal protein, large P2, like; Belongs to the eukaryotic ribosomal protein P1/P2 family. (115 aa)
mphosph10U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (682 aa)
rps14Ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (151 aa)
exosc1Exosome component 1. (237 aa)
ENSKMAP00000001462Alba domain-containing protein. (152 aa)
ENSKMAP0000000140640S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (193 aa)
rps2540S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (124 aa)
wdr12Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (423 aa)
nop58NOP58 ribonucleoprotein homolog (yeast). (553 aa)
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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