75 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108250222	PH domain-containing protein. (704 aa)
	ptpn2	Tyrosine-protein phosphatase non-receptor type. (412 aa)
	LOC108228576	RAN binding protein 10. (444 aa)
	ranbp9	RAN binding protein 9. (601 aa)
	stam	Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1. (521 aa)
	gga3	Golgi associated, gamma adaptin ear containing, ARF binding protein 3b. (716 aa)
	eps15	Epidermal growth factor receptor pathway substrate 15. (1102 aa)
	ENSKMAP00000029695	Uncharacterized protein. (813 aa)
	hpn	Hepsin; Belongs to the peptidase S1 family. (427 aa)
	sh3kbp1	SH3-domain kinase binding protein 1. (612 aa)
	ENSKMAP00000001210	Protein kinase domain-containing protein. (257 aa)
	ENSKMAP00000001687	Uncharacterized protein. (301 aa)
	ENSKMAP00000001780	Golgi associated, gamma adaptin ear containing, ARF binding protein 3a. (512 aa)
	LOC108239982	HRas proto-oncogene, GTPase a. (189 aa)
	LOC108237634	Tyrosine-protein kinase. (549 aa)
	sh3gl2	SH3 domain containing GRB2 like 2a, endophilin A1. (363 aa)
	sh3gl1	SH3-domain GRB2-like 1b. (351 aa)
	ENSKMAP00000003379	SHC (Src homology 2 domain containing) transforming protein 1. (340 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	TNS1	Tensin 1. (1004 aa)
	LOC108248584	Zgc:158659; Belongs to the PI3/PI4-kinase family. (1070 aa)
	gab1	GRB2-associated binding protein 1. (786 aa)
	KRAS	GTPase KRas; Ras proteins bind GDP/GTP and possess intrinsic GTPase activity. Plays an important role in the regulation of cell proliferation. May play a role in promoting oncogenic events by inducing transcriptional silencing of tumor suppressor genes (TSGs). Belongs to the small GTPase superfamily. Ras family. (189 aa)
	ENSKMAP00000005470	Uncharacterized protein. (112 aa)
	PIK3CA	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit. (1068 aa)
	fndc3a	Fibronectin type III domain containing 3A. (1238 aa)
	LOC108249741	Uncharacterized protein. (351 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	LOC108232056	Uncharacterized protein. (185 aa)
	ENSKMAP00000006773	Uncharacterized protein. (338 aa)
	stam2	Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2. (514 aa)
	ENSKMAP00000028316	Uncharacterized protein. (115 aa)
	CSDE1	Cold shock domain containing E1, RNA-binding. (861 aa)
	ENSKMAP00000007682	Laminin, alpha 5. (1521 aa)
	fndc3b	Fibronectin type III domain containing 3Ba. (896 aa)
	LOC108249226	Uncharacterized protein. (1009 aa)
	LOC108241382	Tyrosine-protein phosphatase non-receptor type. (405 aa)
	LOC108229671	Phosphatase tensin-type domain-containing protein. (134 aa)
	LOC108243534	RAB4B, member RAS oncogene family. (213 aa)
	LOC108233124	Laminin, beta 2 (laminin S). (1786 aa)
	LOC108238424	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit. (1068 aa)
	lrig1	Leucine-rich repeats and immunoglobulin-like domains 1. (1038 aa)
	LOC108248149	V-crk avian sarcoma virus CT10 oncogene homolog. (307 aa)
	ENSKMAP00000012225	Collagen, type XXVII, alpha 1b. (1025 aa)
	lamc3	Laminin, gamma 3. (1636 aa)
	LOC108243005	Zgc:55558. (187 aa)
	rapgef1	Rap guanine nucleotide exchange factor (GEF) 1b. (1115 aa)
	cd2ap	Uncharacterized protein. (556 aa)
	ENSKMAP00000014853	Sema domain-containing protein. (734 aa)
	dock7	Dedicator of cytokinesis 7; Belongs to the DOCK family. (2096 aa)
	lamb1	Laminin, beta 1a. (1800 aa)
	LOC108235488	Cbl proto-oncogene C, E3 ubiquitin protein ligase. (570 aa)
	ubb	Uncharacterized protein. (270 aa)
	LOC108236256	Growth factor receptor-bound protein 2b. (224 aa)
	hgs	Hepatocyte growth factor-regulated tyrosine kinase substrate. (779 aa)
	ENSKMAP00000017720	Uncharacterized protein. (515 aa)
	crkl	V-crk avian sarcoma virus CT10 oncogene homolog-like. (316 aa)
	ENSKMAP00000017830	Si:ch211-241e1.3. (1195 aa)
	hgf	Hepatocyte growth factor; Potent mitogen for mature parenchymal hepatocyte cells, seems to be a hepatotrophic factor, and acts as a growth factor for a broad spectrum of tissues and cell types. Activating ligand for the receptor tyrosine kinase MET by binding to it and promoting its dimerization. Belongs to the peptidase S1 family. Plasminogen subfamily. (713 aa)
	LOC108231658	RAP1A, member of RAS oncogene family b. (185 aa)
	sh3d21	SH3 domain containing 21. (485 aa)
	LOC108242575	Serine peptidase inhibitor, Kunitz type 1 b. (501 aa)
	TNS3	Tensin 3. (1383 aa)
	SRC	Tyrosine-protein kinase. (550 aa)
	lama4	Laminin, alpha 4. (1473 aa)
	LOC108246548	CRK proto-oncogene, adaptor protein. (310 aa)
	cbl	Cbl proto-oncogene, E3 ubiquitin protein ligase. (950 aa)
	spint1	Serine peptidase inhibitor, Kunitz type 1 a. (497 aa)
	Lamc1	Uncharacterized protein. (146 aa)
	LOC108238085	Uncharacterized protein. (881 aa)
	LOC108249567	Tyrosine-protein phosphatase non-receptor type. (435 aa)
	lamb3	Uncharacterized protein. (1162 aa)
	LOC108238520	Tensin 1b. (802 aa)
	ARF6	ADP ribosylation factor 6. (134 aa)
	rab4a	RAB4a, member RAS oncogene family. (213 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARF6	ENSKMAP00000001210	ENSKMAP00000026779	ENSKMAP00000001210	ADP ribosylation factor 6.	Protein kinase domain-containing protein.	0.723
ARF6	ENSKMAP00000001780	ENSKMAP00000026779	ENSKMAP00000001780	ADP ribosylation factor 6.	Golgi associated, gamma adaptin ear containing, ARF binding protein 3a.	0.808
ARF6	ENSKMAP00000014853	ENSKMAP00000026779	ENSKMAP00000014853	ADP ribosylation factor 6.	Sema domain-containing protein.	0.723
ARF6	LOC108236256	ENSKMAP00000026779	ENSKMAP00000017060	ADP ribosylation factor 6.	Growth factor receptor-bound protein 2b.	0.622
ARF6	LOC108243534	ENSKMAP00000026779	ENSKMAP00000011009	ADP ribosylation factor 6.	RAB4B, member RAS oncogene family.	0.446
ARF6	LOC108246548	ENSKMAP00000026779	ENSKMAP00000020188	ADP ribosylation factor 6.	CRK proto-oncogene, adaptor protein.	0.524
ARF6	LOC108248149	ENSKMAP00000026779	ENSKMAP00000012072	ADP ribosylation factor 6.	V-crk avian sarcoma virus CT10 oncogene homolog.	0.524
ARF6	LOC108250222	ENSKMAP00000026779	ENSKMAP00000000344	ADP ribosylation factor 6.	PH domain-containing protein.	0.498
ARF6	crkl	ENSKMAP00000026779	ENSKMAP00000017813	ADP ribosylation factor 6.	V-crk avian sarcoma virus CT10 oncogene homolog-like.	0.524
ARF6	gab1	ENSKMAP00000026779	ENSKMAP00000004797	ADP ribosylation factor 6.	GRB2-associated binding protein 1.	0.498
ARF6	gga3	ENSKMAP00000026779	ENSKMAP00000028052	ADP ribosylation factor 6.	Golgi associated, gamma adaptin ear containing, ARF binding protein 3b.	0.808
ARF6	hgf	ENSKMAP00000026779	ENSKMAP00000017984	ADP ribosylation factor 6.	Hepatocyte growth factor; Potent mitogen for mature parenchymal hepatocyte cells, seems to be a hepatotrophic factor, and acts as a growth factor for a broad spectrum of tissues and cell types. Activating ligand for the receptor tyrosine kinase MET by binding to it and promoting its dimerization. Belongs to the peptidase S1 family. Plasminogen subfamily.	0.409
ARF6	rab4a	ENSKMAP00000026779	ENSKMAP00000027307	ADP ribosylation factor 6.	RAB4a, member RAS oncogene family.	0.446
CSDE1	ENSKMAP00000001210	ENSKMAP00000007641	ENSKMAP00000001210	Cold shock domain containing E1, RNA-binding.	Protein kinase domain-containing protein.	0.592
CSDE1	ENSKMAP00000003379	ENSKMAP00000007641	ENSKMAP00000003379	Cold shock domain containing E1, RNA-binding.	SHC (Src homology 2 domain containing) transforming protein 1.	0.436
CSDE1	ENSKMAP00000014853	ENSKMAP00000007641	ENSKMAP00000014853	Cold shock domain containing E1, RNA-binding.	Sema domain-containing protein.	0.592
CSDE1	LOC108231658	ENSKMAP00000007641	ENSKMAP00000018097	Cold shock domain containing E1, RNA-binding.	RAP1A, member of RAS oncogene family b.	0.401
CSDE1	LOC108232056	ENSKMAP00000007641	ENSKMAP00000006466	Cold shock domain containing E1, RNA-binding.	Uncharacterized protein.	0.401
CSDE1	LOC108236256	ENSKMAP00000007641	ENSKMAP00000017060	Cold shock domain containing E1, RNA-binding.	Growth factor receptor-bound protein 2b.	0.678
CSDE1	LOC108237634	ENSKMAP00000007641	ENSKMAP00000002899	Cold shock domain containing E1, RNA-binding.	Tyrosine-protein kinase.	0.428