36 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mnat1	CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (311 aa)
	polr2h	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
	gtf2h5	General transcription factor IIH, polypeptide 5. (71 aa)
	spag7	Sperm-associated antigen 7 homolog. (244 aa)
	Polr2d	Polymerase (RNA) II (DNA directed) polypeptide D. (177 aa)
	polr2g	Polymerase (RNA) II (DNA directed) polypeptide G-like. (189 aa)
	cdk7	Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (343 aa)
	ENSKMAP00000018531	annotation not available (167 aa)
	polr2f	Polymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
	polr2j	Polymerase (RNA) II (DNA directed) polypeptide J. (149 aa)
	polr2c	Polymerase (RNA) II (DNA directed) polypeptide C. (275 aa)
	LOC108248915	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (58 aa)
	polr2a	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1777 aa)
	LOC108242515	Dual specificity phosphatase 11 (RNA/RNP complex 1-interacting). (346 aa)
	polr2b	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
	ENSKMAP00000025915	Uncharacterized protein. (635 aa)
	LOC108232507	General transcription factor IIH subunit. (392 aa)
	ercc3	Excision repair cross-complementation group 3. (783 aa)
	gtf2h3	General transcription factor IIH, polypeptide 3. (299 aa)
	rngtt	Polynucleotide 5'-triphosphatase; Bifunctional mRNA-capping enzyme exhibiting RNA 5'- triphosphatase activity in the N-terminal part and mRNA guanylyltransferase activity in the C-terminal part. Catalyzes the first two steps of cap formation: by removing the gamma-phosphate from the 5'-triphosphate end of nascent mRNA to yield a diphosphate end, and by transferring the gmp moiety of GTP to the 5'-diphosphate terminus. (601 aa)
	gtf2h1	General transcription factor IIH, polypeptide 1. (409 aa)
	ENSKMAP00000028503	PH_TFIIH domain-containing protein. (131 aa)
	ercc2	Excision repair cross-complementation group 2. (760 aa)
	gtf2f2	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (268 aa)
	gtf2f1	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (530 aa)
	ENSKMAP00000001472	TYR_PHOSPHATASE_2 domain-containing protein. (322 aa)
	LOC108240442	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (261 aa)
	gtf2h4	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (463 aa)
	polr2i	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
	rnmt	mRNA cap guanine-N7 methyltransferase. (382 aa)
	polr2l	Polymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
	NCBP1	Nuclear cap binding protein subunit 1. (795 aa)
	supt5h	Transcription elongation factor SPT5. (1049 aa)
	ccnh	Cyclin H; Belongs to the cyclin family. (333 aa)
	POLR2E	RNA polymerase II subunit E. (210 aa)
	LOC108239717	Polymerase (RNA) II (DNA directed) polypeptide K. (58 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSKMAP00000001472	ENSKMAP00000018531	ENSKMAP00000001472	ENSKMAP00000018531	TYR_PHOSPHATASE_2 domain-containing protein.	annotation not available	0.738
ENSKMAP00000001472	ENSKMAP00000025915	ENSKMAP00000001472	ENSKMAP00000025915	TYR_PHOSPHATASE_2 domain-containing protein.	Uncharacterized protein.	0.738
ENSKMAP00000001472	NCBP1	ENSKMAP00000001472	ENSKMAP00000004748	TYR_PHOSPHATASE_2 domain-containing protein.	Nuclear cap binding protein subunit 1.	0.682
ENSKMAP00000001472	POLR2E	ENSKMAP00000001472	ENSKMAP00000007935	TYR_PHOSPHATASE_2 domain-containing protein.	RNA polymerase II subunit E.	0.617
ENSKMAP00000001472	Polr2d	ENSKMAP00000001472	ENSKMAP00000014234	TYR_PHOSPHATASE_2 domain-containing protein.	Polymerase (RNA) II (DNA directed) polypeptide D.	0.685
ENSKMAP00000001472	cdk7	ENSKMAP00000001472	ENSKMAP00000017456	TYR_PHOSPHATASE_2 domain-containing protein.	Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily.	0.503
ENSKMAP00000001472	gtf2f1	ENSKMAP00000001472	ENSKMAP00000001405	TYR_PHOSPHATASE_2 domain-containing protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.595
ENSKMAP00000001472	gtf2h3	ENSKMAP00000001472	ENSKMAP00000026350	TYR_PHOSPHATASE_2 domain-containing protein.	General transcription factor IIH, polypeptide 3.	0.602
ENSKMAP00000001472	mnat1	ENSKMAP00000001472	ENSKMAP00000007944	TYR_PHOSPHATASE_2 domain-containing protein.	CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex.	0.651
ENSKMAP00000001472	polr2a	ENSKMAP00000001472	ENSKMAP00000022045	TYR_PHOSPHATASE_2 domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.546
ENSKMAP00000001472	polr2b	ENSKMAP00000001472	ENSKMAP00000024169	TYR_PHOSPHATASE_2 domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.633
ENSKMAP00000001472	polr2c	ENSKMAP00000001472	ENSKMAP00000021802	TYR_PHOSPHATASE_2 domain-containing protein.	Polymerase (RNA) II (DNA directed) polypeptide C.	0.733
ENSKMAP00000001472	polr2f	ENSKMAP00000001472	ENSKMAP00000019145	TYR_PHOSPHATASE_2 domain-containing protein.	Polymerase (RNA) II (DNA directed) polypeptide F.	0.600
ENSKMAP00000001472	polr2g	ENSKMAP00000001472	ENSKMAP00000014829	TYR_PHOSPHATASE_2 domain-containing protein.	Polymerase (RNA) II (DNA directed) polypeptide G-like.	0.689
ENSKMAP00000001472	polr2h	ENSKMAP00000001472	ENSKMAP00000011146	TYR_PHOSPHATASE_2 domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.598
ENSKMAP00000001472	polr2i	ENSKMAP00000001472	ENSKMAP00000002043	TYR_PHOSPHATASE_2 domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.635
ENSKMAP00000001472	polr2j	ENSKMAP00000001472	ENSKMAP00000019586	TYR_PHOSPHATASE_2 domain-containing protein.	Polymerase (RNA) II (DNA directed) polypeptide J.	0.594
ENSKMAP00000001472	polr2l	ENSKMAP00000001472	ENSKMAP00000004285	TYR_PHOSPHATASE_2 domain-containing protein.	Polymerase (RNA) II (DNA directed) polypeptide L.	0.622
ENSKMAP00000001472	rnmt	ENSKMAP00000001472	ENSKMAP00000002503	TYR_PHOSPHATASE_2 domain-containing protein.	mRNA cap guanine-N7 methyltransferase.	0.770
ENSKMAP00000001472	supt5h	ENSKMAP00000001472	ENSKMAP00000005883	TYR_PHOSPHATASE_2 domain-containing protein.	Transcription elongation factor SPT5.	0.738