STRINGSTRING
LOC108239511 LOC108239511 rnps1 rnps1 alyref alyref nup98 nup98 LOC108240013 LOC108240013 LOC108231118 LOC108231118 LOC108232699 LOC108232699 dhx38 dhx38 LOC108241730 LOC108241730 LOC108229566 LOC108229566 nup153 nup153 ENSKMAP00000008119 ENSKMAP00000008119 rae1 rae1 LOC108241696 LOC108241696 nup58 nup58 slu7 slu7 LOC108228809 LOC108228809 LOC108243052 LOC108243052 fyttd1 fyttd1 nxf1 nxf1 thoc1 thoc1 gle1 gle1 NCBP1 NCBP1 LOC108248551 LOC108248551 ENSKMAP00000001637 ENSKMAP00000001637 LOC108240408 LOC108240408 nup107 nup107 chtop chtop ddx39a ddx39a LOC108245000 LOC108245000 seh1l seh1l nup43 nup43 nup133 nup133 cdc40 cdc40 nup35 nup35 DDX39A DDX39A aaas aaas thoc2 thoc2 NUP54 NUP54 nup37 nup37 tpr tpr sarnp sarnp ENSKMAP00000018563 ENSKMAP00000018563 poldip3 poldip3 thoc5 thoc5 thoc6 thoc6 nup210 nup210 rbm8a rbm8a LOC108228363 LOC108228363 NUP214 NUP214 nxt2 nxt2 ENSKMAP00000023072 ENSKMAP00000023072 NUP62 NUP62 LOC108246661 LOC108246661 thoc3 thoc3 LOC108248377 LOC108248377 nup42 nup42 sec13 sec13 srsf1 srsf1 LOC108238015 LOC108238015 casc3 casc3 upf3b upf3b LOC108233477 LOC108233477 nup85 nup85 ndc1 ndc1 nup93 nup93 SRSF3 SRSF3 nup205 nup205 LOC108232400 LOC108232400 nup188 nup188 LOC108236682 LOC108236682 nup160 nup160 eif4a3 eif4a3 srsf11 srsf11 nup155 nup155 ncbp2 ncbp2 thoc7 thoc7 srsf2 srsf2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC108239511Translocated promoter region a, nuclear basket protein. (2040 aa)
rnps1RNA binding protein S1, serine-rich domain. (279 aa)
alyrefAly/REF export factor. (273 aa)
nup98Nucleoporin 98. (1811 aa)
LOC108240013Stem-loop binding protein. (278 aa)
LOC108231118RRM domain-containing protein. (168 aa)
LOC108232699Serine and arginine rich splicing factor 9. (247 aa)
dhx38DEAH (Asp-Glu-Ala-His) box polypeptide 38. (1253 aa)
LOC108241730Eukaryotic translation initiation factor 4eb; Belongs to the eukaryotic initiation factor 4E family. (236 aa)
LOC108229566RRM domain-containing protein. (239 aa)
nup153Nucleoporin 153. (1499 aa)
ENSKMAP00000008119RRM domain-containing protein. (146 aa)
rae1Ribonucleic acid export 1. (368 aa)
LOC108241696RRM domain-containing protein. (453 aa)
nup58Nucleoporin 58. (590 aa)
slu7SLU7 homolog, splicing factor. (569 aa)
LOC108228809SLBP_RNA_bind domain-containing protein. (336 aa)
LOC108243052Eukaryotic translation initiation factor 4E family member 1c; Belongs to the eukaryotic initiation factor 4E family. (208 aa)
fyttd1Uncharacterized protein. (319 aa)
nxf1Zgc:153681. (663 aa)
thoc1THO complex 1. (653 aa)
gle1GLE1 RNA export mediator. (710 aa)
NCBP1Nuclear cap binding protein subunit 1. (795 aa)
LOC108248551Serine and arginine rich splicing factor 7a. (256 aa)
ENSKMAP00000001637WD repeat domain 33. (267 aa)
LOC108240408RAN binding protein 2. (3043 aa)
nup107Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (908 aa)
chtopChromatin target of PRMT1a. (252 aa)
ddx39aUncharacterized protein. (427 aa)
LOC108245000Uncharacterized protein. (227 aa)
seh1lSEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family. (383 aa)
nup43Nucleoporin 43. (371 aa)
nup133Nucleoporin 133. (1138 aa)
cdc40Cell division cycle 40 homolog (S. cerevisiae). (581 aa)
nup35Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (297 aa)
DDX39ADExD-box helicase 39A. (440 aa)
aaasAchalasia, adrenocortical insufficiency, alacrimia. (518 aa)
thoc2THO complex 2. (1407 aa)
NUP54Nucleoporin 54. (623 aa)
nup37Nucleoporin 37. (326 aa)
tprTranslocated promoter region b, nuclear basket protein. (2200 aa)
sarnpSAP domain containing ribonucleoprotein. (213 aa)
ENSKMAP00000018563PWI domain-containing protein. (90 aa)
poldip3Polymerase (DNA-directed), delta interacting protein 3. (481 aa)
thoc5THO complex 5. (684 aa)
thoc6THO complex 6. (323 aa)
nup210Nucleoporin 210. (1882 aa)
rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (175 aa)
LOC108228363Nucleoporin 50. (312 aa)
NUP214Nucleoporin 214. (1975 aa)
nxt2Nuclear transport factor 2-like export factor 2. (150 aa)
ENSKMAP00000023072Uncharacterized protein. (120 aa)
NUP62Nucleoporin 62. (552 aa)
LOC108246661Mago homolog, exon junction complex subunit. (147 aa)
thoc3THO complex 3. (322 aa)
LOC108248377Zinc finger CCCH-type containing 11A. (832 aa)
nup42Nucleoporin 42. (436 aa)
sec13SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family. (320 aa)
srsf1Serine and arginine rich splicing factor 1a. (246 aa)
LOC108238015POM121 transmembrane nucleoporin. (1163 aa)
casc3Casc3 exon junction complex subunit. (741 aa)
upf3bUPF3B regulator of nonsense mediated mRNA decay. (456 aa)
LOC108233477Serine and arginine rich splicing factor 5b. (299 aa)
nup85Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (651 aa)
ndc1NDC1 transmembrane nucleoporin. (669 aa)
nup93Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (821 aa)
SRSF3Serine and arginine rich splicing factor 3b. (251 aa)
nup205Nucleoporin 205. (1960 aa)
LOC108232400U2 small nuclear RNA auxiliary factor 1. (277 aa)
nup188Nucleoporin 188. (1712 aa)
LOC108236682Eukaryotic translation initiation factor 4ea; Belongs to the eukaryotic initiation factor 4E family. (216 aa)
nup160Nucleoporin 160. (1399 aa)
eif4a3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (423 aa)
srsf11Serine and arginine rich splicing factor 11. (466 aa)
nup155Nucleoporin 155. (1367 aa)
ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (164 aa)
thoc7THO complex 7. (203 aa)
srsf2Serine and arginine rich splicing factor 2a. (229 aa)
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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