STRINGSTRING
LOC108235376 LOC108235376 LOC108232507 LOC108232507 ercc3 ercc3 ercc2 ercc2 ENSKMAP00000028753 ENSKMAP00000028753 ENSKMAP00000028503 ENSKMAP00000028503 gtf2h1 gtf2h1 LOC108247324 LOC108247324 LOC108247325 LOC108247325 tbp tbp ercc6 ercc6 ENSKMAP00000026427 ENSKMAP00000026427 gtf2h3 gtf2h3 chd3 chd3 LOC108242669 LOC108242669 cbx3 cbx3 taf1a taf1a chd5 chd5 ENSKMAP00000022629 ENSKMAP00000022629 ENSKMAP00000022580 ENSKMAP00000022580 ENSKMAP00000022564 ENSKMAP00000022564 LOC108248915 LOC108248915 polr1b polr1b ENSKMAP00000021156 ENSKMAP00000021156 ENSKMAP00000021154 ENSKMAP00000021154 LOC108251254 LOC108251254 LOC108232401 LOC108232401 polr1c polr1c ENSKMAP00000019155 ENSKMAP00000019155 polr2f polr2f LOC108239071 LOC108239071 LOC108243116 LOC108243116 ENSKMAP00000018069 ENSKMAP00000018069 LOC108228304 LOC108228304 mta1 mta1 cdk7 cdk7 tbpl1 tbpl1 LOC108237907 LOC108237907 LOC108245856 LOC108245856 mta3 mta3 LOC108237764 LOC108237764 LOC108228223 LOC108228223 ubtf ubtf ENSKMAP00000013110 ENSKMAP00000013110 LOC108229777 LOC108229777 ENSKMAP00000012922 ENSKMAP00000012922 dmtf1 dmtf1 gtf2h5 gtf2h5 ENSKMAP00000011726 ENSKMAP00000011726 polr2h polr2h ENSKMAP00000010962 ENSKMAP00000010962 ENSKMAP00000010784 ENSKMAP00000010784 ENSKMAP00000010652 ENSKMAP00000010652 LOC108247233 LOC108247233 LOC108239717 LOC108239717 taf1c taf1c polr1a polr1a LOC108240530 LOC108240530 LOC108240031 LOC108240031 LOC108240030 LOC108240030 ENSKMAP00000009348 ENSKMAP00000009348 LOC108239474 LOC108239474 LOC108251019 LOC108251019 rrn3 rrn3 mta2 mta2 mnat1 mnat1 POLR2E POLR2E LOC108239526 LOC108239526 H2AZ1 H2AZ1 LOC112450151 LOC112450151 ENSKMAP00000006990 ENSKMAP00000006990 ccnh ccnh ENSKMAP00000006891 ENSKMAP00000006891 gatad2a gatad2a ENSKMAP00000006625 ENSKMAP00000006625 ENSKMAP00000006394 ENSKMAP00000006394 LOC108241661 LOC108241661 ENSKMAP00000005396 ENSKMAP00000005396 LOC108229423 LOC108229423 LOC108230843 LOC108230843 polr2l polr2l taf1b taf1b ENSKMAP00000003646 ENSKMAP00000003646 LOC108242801 LOC108242801 H3-3B H3-3B twistnb twistnb gtf2h4 gtf2h4 znrd1 znrd1 gatad2b gatad2b polr1e polr1e
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC108235376Uncharacterized protein. (1969 aa)
LOC108232507General transcription factor IIH subunit. (392 aa)
ercc3Excision repair cross-complementation group 3. (783 aa)
ercc2Excision repair cross-complementation group 2. (760 aa)
ENSKMAP00000028753Histone H2A; Belongs to the histone H2A family. (124 aa)
ENSKMAP00000028503PH_TFIIH domain-containing protein. (131 aa)
gtf2h1General transcription factor IIH, polypeptide 1. (409 aa)
LOC108247324Histone domain-containing protein. (153 aa)
LOC108247325Histone H3.3. (136 aa)
tbpTATA box binding protein. (304 aa)
ercc6Excision repair cross-complementation group 6. (1442 aa)
ENSKMAP00000026427Histone domain-containing protein. (134 aa)
gtf2h3General transcription factor IIH, polypeptide 3. (299 aa)
chd3Chromodomain helicase DNA binding protein 3. (1811 aa)
LOC108242669Chromodomain helicase DNA binding protein 4a. (1769 aa)
cbx3Chromobox homolog 3a (HP1 gamma homolog, Drosophila). (172 aa)
taf1aTATA box binding protein (TBP)-associated factor, RNA polymerase I, A. (433 aa)
chd5Uncharacterized protein. (1779 aa)
ENSKMAP00000022629Histone domain-containing protein. (97 aa)
ENSKMAP00000022580Histone H3; Belongs to the histone H3 family. (127 aa)
ENSKMAP00000022564Histone H2B; Belongs to the histone H2B family. (168 aa)
LOC108248915DNA-directed RNA polymerases I, II, and III subunit RPABC4. (58 aa)
polr1bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1134 aa)
ENSKMAP00000021156Histone domain-containing protein. (123 aa)
ENSKMAP00000021154Uncharacterized protein. (91 aa)
LOC108251254CD3e molecule, epsilon associated protein. (332 aa)
LOC108232401Retinoblastoma binding protein 4. (424 aa)
polr1cRNA polymerase I and III subunit C. (361 aa)
ENSKMAP00000019155Histone H2A; Belongs to the histone H2A family. (137 aa)
polr2fPolymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
LOC108239071Histone H3; Belongs to the histone H3 family. (142 aa)
LOC108243116Histone H3.3. (136 aa)
ENSKMAP00000018069Histone H2B; Belongs to the histone H2B family. (151 aa)
LOC108228304TATA box binding protein like 2. (310 aa)
mta1Metastasis associated 1. (619 aa)
cdk7Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (343 aa)
tbpl1TBP-like 1. (189 aa)
LOC108237907Retinoblastoma binding protein 4, like. (440 aa)
LOC108245856Histone H2B; Belongs to the histone H2B family. (124 aa)
mta3Metastasis associated 1 family, member 3. (700 aa)
LOC108237764Histone domain-containing protein. (123 aa)
LOC108228223Upstream binding transcription factor, like. (695 aa)
ubtfUpstream binding transcription factor. (744 aa)
ENSKMAP00000013110Histone domain-containing protein. (113 aa)
LOC108229777Histone H4. (103 aa)
ENSKMAP00000012922Histone H2B; Belongs to the histone H2B family. (155 aa)
dmtf1Cyclin D binding myb-like transcription factor 1. (637 aa)
gtf2h5General transcription factor IIH, polypeptide 5. (71 aa)
ENSKMAP00000011726Histone H2A; Belongs to the histone H2A family. (134 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
ENSKMAP00000010962Histone H2A; Belongs to the histone H2A family. (134 aa)
ENSKMAP00000010784annotation not available (146 aa)
ENSKMAP00000010652Histone H2A; Belongs to the histone H2A family. (146 aa)
LOC108247233Histone H4. (103 aa)
LOC108239717Polymerase (RNA) II (DNA directed) polypeptide K. (58 aa)
taf1cWu:fj64h06. (975 aa)
polr1aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1678 aa)
LOC108240530Germ cell nuclear acidic peptidase. (579 aa)
LOC108240031Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
LOC108240030Histone H2B; Belongs to the histone H2B family. (124 aa)
ENSKMAP00000009348Histone H2A; Belongs to the histone H2A family. (135 aa)
LOC108239474Uncharacterized protein. (243 aa)
LOC108251019Methyl-CpG binding domain protein 2. (266 aa)
rrn3RRN3 homolog, RNA polymerase I transcription factor. (610 aa)
mta2Metastasis associated 1 family, member 2. (665 aa)
mnat1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (311 aa)
POLR2ERNA polymerase II subunit E. (210 aa)
LOC108239526Uncharacterized protein. (749 aa)
H2AZ1Histone H2A; Belongs to the histone H2A family. (128 aa)
LOC112450151Uncharacterized protein. (205 aa)
ENSKMAP00000006990Myb-like domain-containing protein. (390 aa)
ccnhCyclin H; Belongs to the cyclin family. (333 aa)
ENSKMAP00000006891Histone domain-containing protein. (104 aa)
gatad2aGATA zinc finger domain containing 2Ab. (639 aa)
ENSKMAP00000006625Histone domain-containing protein. (132 aa)
ENSKMAP00000006394Histone domain-containing protein. (99 aa)
LOC108241661Histone H2B; Belongs to the histone H2B family. (116 aa)
ENSKMAP00000005396Histone domain-containing protein. (158 aa)
LOC108229423Histone H2B; Belongs to the histone H2B family. (124 aa)
LOC108230843Methyl-CpG binding domain protein 3a. (297 aa)
polr2lPolymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
taf1bTATA box binding protein (Tbp)-associated factor, RNA polymerase I, B. (515 aa)
ENSKMAP00000003646Uncharacterized protein; Belongs to the histone H2B family. (148 aa)
LOC108242801Histone H2A; Belongs to the histone H2A family. (132 aa)
H3-3BHistone H3; Belongs to the histone H3 family. (136 aa)
twistnbTWIST neighbor. (370 aa)
gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (463 aa)
znrd1DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (119 aa)
gatad2bGATA zinc finger domain containing 2B. (658 aa)
polr1eRNA polymerase I subunit E. (416 aa)
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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