STRINGSTRING
ENSKMAP00000001637 ENSKMAP00000001637 thoc5 thoc5 thoc6 thoc6 rbm8a rbm8a cpsf6 cpsf6 srsf5 srsf5 LOC108240158 LOC108240158 ENSKMAP00000021047 ENSKMAP00000021047 sympk sympk papolg papolg cstf1 cstf1 ENSKMAP00000023072 ENSKMAP00000023072 LOC108246661 LOC108246661 thoc3 thoc3 LOC108248377 LOC108248377 pabpn1 pabpn1 srsf1 srsf1 cpsf2 cpsf2 casc3 casc3 upf3b upf3b LOC108233477 LOC108233477 SRSF3 SRSF3 LOC108241575 LOC108241575 LOC108232400 LOC108232400 nudt21 nudt21 LOC108231118 LOC108231118 CPSF3 CPSF3 LOC108232699 LOC108232699 dhx38 dhx38 LOC108229566 LOC108229566 ENSKMAP00000008119 ENSKMAP00000008119 u2af2 u2af2 LOC108241696 LOC108241696 slu7 slu7 LOC108228809 LOC108228809 fyttd1 fyttd1 thoc1 thoc1 NCBP1 NCBP1 CPSF7 CPSF7 LOC108249674 LOC108249674 LOC108248551 LOC108248551 cpsf1 cpsf1 pcf11 pcf11 PABPN1L PABPN1L cstf2 cstf2 chtop chtop ddx39a ddx39a LOC108245000 LOC108245000 znf318 znf318 poldip3 poldip3 ENSKMAP00000018563 ENSKMAP00000018563 tprg1l tprg1l LOC108229131 LOC108229131 sarnp sarnp thoc2 thoc2 LSM10 LSM10 clp1 clp1 srsf6 srsf6 DDX39A DDX39A cstf3 cstf3 cdc40 cdc40 zc3h13 zc3h13 eif4a3 eif4a3 srsf11 srsf11 ENSKMAP00000013052 ENSKMAP00000013052 ncbp2 ncbp2 thoc7 thoc7 srsf2 srsf2 ncmap ncmap WDR25 WDR25 lsm11 lsm11 rnps1 rnps1 alyref alyref
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ENSKMAP00000001637WD repeat domain 33. (267 aa)
thoc5THO complex 5. (684 aa)
thoc6THO complex 6. (323 aa)
rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (175 aa)
cpsf6Cleavage and polyadenylation specific factor 6. (582 aa)
srsf5Serine and arginine rich splicing factor 5a. (324 aa)
LOC108240158Tumor protein p63 regulated 1. (278 aa)
ENSKMAP00000021047Cleavage and polyadenylation specific factor 4. (265 aa)
sympkSymplekin. (1221 aa)
papolgPoly(A) polymerase gamma. (835 aa)
cstf1Cleavage stimulation factor, 3' pre-RNA, subunit 1. (431 aa)
ENSKMAP00000023072Uncharacterized protein. (120 aa)
LOC108246661Mago homolog, exon junction complex subunit. (147 aa)
thoc3THO complex 3. (322 aa)
LOC108248377Zinc finger CCCH-type containing 11A. (832 aa)
pabpn1Poly(A) binding protein, nuclear 1. (285 aa)
srsf1Serine and arginine rich splicing factor 1a. (246 aa)
cpsf2Cleavage and polyadenylation specificity factor subunit 2. (787 aa)
casc3Casc3 exon junction complex subunit. (741 aa)
upf3bUPF3B regulator of nonsense mediated mRNA decay. (456 aa)
LOC108233477Serine and arginine rich splicing factor 5b. (299 aa)
SRSF3Serine and arginine rich splicing factor 3b. (251 aa)
LOC108241575FIP1 like 1b (S. cerevisiae). (541 aa)
LOC108232400U2 small nuclear RNA auxiliary factor 1. (277 aa)
nudt21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (231 aa)
LOC108231118RRM domain-containing protein. (168 aa)
CPSF3Cleavage and polyadenylation specific factor 3. (690 aa)
LOC108232699Serine and arginine rich splicing factor 9. (247 aa)
dhx38DEAH (Asp-Glu-Ala-His) box polypeptide 38. (1253 aa)
LOC108229566RRM domain-containing protein. (239 aa)
ENSKMAP00000008119RRM domain-containing protein. (146 aa)
u2af2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (470 aa)
LOC108241696RRM domain-containing protein. (453 aa)
slu7SLU7 homolog, splicing factor. (569 aa)
LOC108228809SLBP_RNA_bind domain-containing protein. (336 aa)
fyttd1Uncharacterized protein. (319 aa)
thoc1THO complex 1. (653 aa)
NCBP1Nuclear cap binding protein subunit 1. (795 aa)
CPSF7Cleavage and polyadenylation specific factor 7. (471 aa)
LOC108249674Cleavage and polyadenylation specific factor 3. (686 aa)
LOC108248551Serine and arginine rich splicing factor 7a. (256 aa)
cpsf1Cleavage and polyadenylation specific factor 1. (1227 aa)
pcf11PCF11 cleavage and polyadenylation factor subunit. (1568 aa)
PABPN1LPoly(A) binding protein nuclear 1 like, cytoplasmic. (226 aa)
cstf2Cleavage stimulation factor, 3' pre-RNA, subunit 2. (491 aa)
chtopChromatin target of PRMT1a. (252 aa)
ddx39aUncharacterized protein. (427 aa)
LOC108245000Uncharacterized protein. (227 aa)
znf318C2H2-type domain-containing protein. (1945 aa)
poldip3Polymerase (DNA-directed), delta interacting protein 3. (481 aa)
ENSKMAP00000018563PWI domain-containing protein. (90 aa)
tprg1lTumor protein p63 regulated 1-like. (282 aa)
LOC108229131Serine and arginine rich splicing factor 4. (349 aa)
sarnpSAP domain containing ribonucleoprotein. (213 aa)
thoc2THO complex 2. (1407 aa)
LSM10LSM10, U7 small nuclear RNA associated. (121 aa)
clp1Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...] (441 aa)
srsf6Serine and arginine rich splicing factor 6a. (288 aa)
DDX39ADExD-box helicase 39A. (440 aa)
cstf3Cleavage stimulation factor, 3' pre-RNA, subunit 3. (716 aa)
cdc40Cell division cycle 40 homolog (S. cerevisiae). (581 aa)
zc3h13Zinc finger CCCH-type containing 13. (1577 aa)
eif4a3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (423 aa)
srsf11Serine and arginine rich splicing factor 11. (466 aa)
ENSKMAP00000013052Uncharacterized protein. (363 aa)
ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (164 aa)
thoc7THO complex 7. (203 aa)
srsf2Serine and arginine rich splicing factor 2a. (229 aa)
ncmapUncharacterized protein. (125 aa)
WDR25WD repeat domain 25. (479 aa)
lsm11LSM11, U7 small nuclear RNA associated. (322 aa)
rnps1RNA binding protein S1, serine-rich domain. (279 aa)
alyrefAly/REF export factor. (273 aa)
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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