STRINGSTRING
gtf2h1 gtf2h1 ENSKMAP00000028503 ENSKMAP00000028503 LOC108232507 LOC108232507 ercc3 ercc3 gtf2f2 gtf2f2 ercc2 ercc2 tcea1 tcea1 ctdp1 ctdp1 leo1 leo1 slc39a13 slc39a13 nelfe nelfe ccnk ccnk ell ell polr2l polr2l NCBP1 NCBP1 ENSKMAP00000004765 ENSKMAP00000004765 supt5h supt5h supt16h supt16h cdc73 cdc73 eaf2 eaf2 ccnh ccnh mllt3 mllt3 ccnq ccnq ctr9 ctr9 cdk9 cdk9 paf1 paf1 POLR2E POLR2E mnat1 mnat1 LOC108228847 LOC108228847 eloc eloc LOC108239717 LOC108239717 cinp cinp polr2h polr2h gtf2h5 gtf2h5 LOC108237701 LOC108237701 ncbp2 ncbp2 aff4 aff4 Polr2d Polr2d eloa eloa gtf2f1 gtf2f1 LOC108240442 LOC108240442 gtf2h4 gtf2h4 polr2i polr2i polr2g polr2g nelfb nelfb ssrp1 ssrp1 nelfa nelfa cdk7 cdk7 supt4h1 supt4h1 LOC108231075 LOC108231075 tcea3 tcea3 ENSKMAP00000017834 ENSKMAP00000017834 ENSKMAP00000017863 ENSKMAP00000017863 LOC108241949 LOC108241949 ccnt1 ccnt1 Mllt1 Mllt1 ENSKMAP00000018531 ENSKMAP00000018531 polr2f polr2f polr2j polr2j rtf1 rtf1 ELOB ELOB nelfcd nelfcd wdr61 wdr61 polr2c polr2c LOC108248915 LOC108248915 polr2a polr2a eaf1 eaf1 LOC108232081 LOC108232081 polr2b polr2b ccnt2 ccnt2 ENSKMAP00000025915 ENSKMAP00000025915 supt6h supt6h LOC108233974 LOC108233974 gtf2h3 gtf2h3 tceanc2 tceanc2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
gtf2h1General transcription factor IIH, polypeptide 1. (409 aa)
ENSKMAP00000028503PH_TFIIH domain-containing protein. (131 aa)
LOC108232507General transcription factor IIH subunit. (392 aa)
ercc3Excision repair cross-complementation group 3. (783 aa)
gtf2f2General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (268 aa)
ercc2Excision repair cross-complementation group 2. (760 aa)
tcea1Transcription elongation factor A (SII), 1. (310 aa)
ctdp1RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (980 aa)
leo1LEO1 homolog, Paf1/RNA polymerase II complex component. (600 aa)
slc39a13Solute carrier family 39 member 13. (411 aa)
nelfeNegative elongation factor complex member E. (378 aa)
ccnkCyclin K; Belongs to the cyclin family. (542 aa)
ellElongation factor RNA polymerase II. (624 aa)
polr2lPolymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
NCBP1Nuclear cap binding protein subunit 1. (795 aa)
ENSKMAP00000004765Uncharacterized protein. (307 aa)
supt5hTranscription elongation factor SPT5. (1049 aa)
supt16hSPT16 homolog, facilitates chromatin remodeling subunit. (1030 aa)
cdc73Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae). (530 aa)
eaf2ELL associated factor 2. (246 aa)
ccnhCyclin H; Belongs to the cyclin family. (333 aa)
mllt3MLLT3 super elongation complex subunit. (578 aa)
ccnqCyclin Q; Belongs to the cyclin family. (257 aa)
ctr9CTR9 homolog, Paf1/RNA polymerase II complex component. (1155 aa)
cdk9Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily. (393 aa)
paf1PAF1 homolog, Paf1/RNA polymerase II complex component. (535 aa)
POLR2ERNA polymerase II subunit E. (210 aa)
mnat1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (311 aa)
LOC108228847TFIIS N-terminal domain-containing protein. (674 aa)
elocElongin C paralog a; Belongs to the SKP1 family. (125 aa)
LOC108239717Polymerase (RNA) II (DNA directed) polypeptide K. (58 aa)
cinpCyclin-dependent kinase 2 interacting protein. (198 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
gtf2h5General transcription factor IIH, polypeptide 5. (71 aa)
LOC108237701Elongin B. (119 aa)
ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (164 aa)
aff4AF4/FMR2 family, member 4. (1141 aa)
Polr2dPolymerase (RNA) II (DNA directed) polypeptide D. (177 aa)
eloaElongin A. (670 aa)
gtf2f1Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (530 aa)
LOC108240442General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (261 aa)
gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (463 aa)
polr2iDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
polr2gPolymerase (RNA) II (DNA directed) polypeptide G-like. (189 aa)
nelfbNegative elongation factor complex member B. (583 aa)
ssrp1FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (733 aa)
nelfaNegative elongation factor complex member A. (550 aa)
cdk7Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (343 aa)
supt4h1Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family. (117 aa)
LOC108231075Uncharacterized protein. (1128 aa)
tcea3Transcription elongation factor A (SII), 3. (340 aa)
ENSKMAP00000017834CYCLIN domain-containing protein; Belongs to the cyclin family. (186 aa)
ENSKMAP00000017863Cyclin T2b. (410 aa)
LOC108241949Si:dkey-12j5.1. (415 aa)
ccnt1Cyclin T1; Belongs to the cyclin family. (699 aa)
Mllt1Uncharacterized protein. (110 aa)
ENSKMAP00000018531annotation not available (167 aa)
polr2fPolymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
polr2jPolymerase (RNA) II (DNA directed) polypeptide J. (149 aa)
rtf1RTF1 homolog, Paf1/RNA polymerase II complex component. (677 aa)
ELOBElongin B. (119 aa)
nelfcdNegative elongation factor complex member C/D. (579 aa)
wdr61WD repeat domain 61. (305 aa)
polr2cPolymerase (RNA) II (DNA directed) polypeptide C. (275 aa)
LOC108248915DNA-directed RNA polymerases I, II, and III subunit RPABC4. (58 aa)
polr2aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1777 aa)
eaf1ELL associated factor 1. (259 aa)
LOC108232081Transcription elongation factor A (SII), 2. (305 aa)
polr2bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
ccnt2Cyclin T2; Belongs to the cyclin family. (718 aa)
ENSKMAP00000025915Uncharacterized protein. (635 aa)
supt6hTranscription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1751 aa)
LOC108233974Elongin A, like. (648 aa)
gtf2h3General transcription factor IIH, polypeptide 3. (299 aa)
tceanc2Uncharacterized protein. (207 aa)
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
Server load: low (18%) [HD]