STRINGSTRING
LOC108241575 LOC108241575 nudt21 nudt21 pcf11 pcf11 cpsf1 cpsf1 LOC108249674 LOC108249674 CPSF7 CPSF7 NCBP1 NCBP1 CPSF3 CPSF3 PABPN1L PABPN1L cstf2 cstf2 ENSKMAP00000001637 ENSKMAP00000001637 ncbp2 ncbp2 ENSKMAP00000013052 ENSKMAP00000013052 cstf3 cstf3 clp1 clp1 cpsf6 cpsf6 ENSKMAP00000021047 ENSKMAP00000021047 sympk sympk papolg papolg cstf1 cstf1 pabpn1 pabpn1 cpsf2 cpsf2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC108241575FIP1 like 1b (S. cerevisiae). (541 aa)
nudt21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (231 aa)
pcf11PCF11 cleavage and polyadenylation factor subunit. (1568 aa)
cpsf1Cleavage and polyadenylation specific factor 1. (1227 aa)
LOC108249674Cleavage and polyadenylation specific factor 3. (686 aa)
CPSF7Cleavage and polyadenylation specific factor 7. (471 aa)
NCBP1Nuclear cap binding protein subunit 1. (795 aa)
CPSF3Cleavage and polyadenylation specific factor 3. (690 aa)
PABPN1LPoly(A) binding protein nuclear 1 like, cytoplasmic. (226 aa)
cstf2Cleavage stimulation factor, 3' pre-RNA, subunit 2. (491 aa)
ENSKMAP00000001637WD repeat domain 33. (267 aa)
ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (164 aa)
ENSKMAP00000013052Uncharacterized protein. (363 aa)
cstf3Cleavage stimulation factor, 3' pre-RNA, subunit 3. (716 aa)
clp1Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...] (441 aa)
cpsf6Cleavage and polyadenylation specific factor 6. (582 aa)
ENSKMAP00000021047Cleavage and polyadenylation specific factor 4. (265 aa)
sympkSymplekin. (1221 aa)
papolgPoly(A) polymerase gamma. (835 aa)
cstf1Cleavage stimulation factor, 3' pre-RNA, subunit 1. (431 aa)
pabpn1Poly(A) binding protein, nuclear 1. (285 aa)
cpsf2Cleavage and polyadenylation specificity factor subunit 2. (787 aa)
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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