17 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSKMAP00000028224	Erb-b2 receptor tyrosine kinase 4b. (421 aa)
	LOC108236992	Neuregulin 2a. (707 aa)
	LOC108235300	Erb-b2 receptor tyrosine kinase 3b. (1454 aa)
	LOC108248942	Receptor protein-tyrosine kinase. (1296 aa)
	egfr	Receptor protein-tyrosine kinase. (1196 aa)
	erbb4	Receptor protein-tyrosine kinase. (1407 aa)
	ENSKMAP00000005163	Uncharacterized protein. (495 aa)
	egf	Epidermal growth factor. (1111 aa)
	LOC108231089	Betacellulin, epidermal growth factor family member. (184 aa)
	LOC108238002	Neuregulin 2b. (563 aa)
	ENSKMAP00000021818	EGF-like domain-containing protein. (279 aa)
	LOC108246056	Crystallin, beta B1, like 3; Belongs to the beta/gamma-crystallin family. (209 aa)
	nrg4	EGF-like domain-containing protein. (106 aa)
	LOC108242040	Heparin-binding EGF-like growth factor a. (234 aa)
	erbb3	Protein kinase domain-containing protein. (1419 aa)
	ENSKMAP00000028192	Uncharacterized protein. (93 aa)
	ENSKMAP00000028283	Protein kinase domain-containing protein. (472 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSKMAP00000005163	ENSKMAP00000021818	ENSKMAP00000005163	ENSKMAP00000021818	Uncharacterized protein.	EGF-like domain-containing protein.	0.659
ENSKMAP00000005163	ENSKMAP00000028283	ENSKMAP00000005163	ENSKMAP00000028283	Uncharacterized protein.	Protein kinase domain-containing protein.	0.666
ENSKMAP00000005163	LOC108231089	ENSKMAP00000005163	ENSKMAP00000017182	Uncharacterized protein.	Betacellulin, epidermal growth factor family member.	0.955
ENSKMAP00000005163	LOC108236992	ENSKMAP00000005163	ENSKMAP00000030024	Uncharacterized protein.	Neuregulin 2a.	0.659
ENSKMAP00000005163	LOC108238002	ENSKMAP00000005163	ENSKMAP00000019056	Uncharacterized protein.	Neuregulin 2b.	0.659
ENSKMAP00000005163	LOC108242040	ENSKMAP00000005163	ENSKMAP00000025271	Uncharacterized protein.	Heparin-binding EGF-like growth factor a.	0.963
ENSKMAP00000005163	LOC108248942	ENSKMAP00000005163	ENSKMAP00000028565	Uncharacterized protein.	Receptor protein-tyrosine kinase.	0.911
ENSKMAP00000005163	egf	ENSKMAP00000005163	ENSKMAP00000013694	Uncharacterized protein.	Epidermal growth factor.	0.986
ENSKMAP00000005163	egfr	ENSKMAP00000005163	ENSKMAP00000004149	Uncharacterized protein.	Receptor protein-tyrosine kinase.	0.901
ENSKMAP00000021818	ENSKMAP00000005163	ENSKMAP00000021818	ENSKMAP00000005163	EGF-like domain-containing protein.	Uncharacterized protein.	0.659
ENSKMAP00000021818	ENSKMAP00000028192	ENSKMAP00000021818	ENSKMAP00000028192	EGF-like domain-containing protein.	Uncharacterized protein.	0.675
ENSKMAP00000021818	ENSKMAP00000028224	ENSKMAP00000021818	ENSKMAP00000028224	EGF-like domain-containing protein.	Erb-b2 receptor tyrosine kinase 4b.	0.675
ENSKMAP00000021818	ENSKMAP00000028283	ENSKMAP00000021818	ENSKMAP00000028283	EGF-like domain-containing protein.	Protein kinase domain-containing protein.	0.675
ENSKMAP00000021818	LOC108231089	ENSKMAP00000021818	ENSKMAP00000017182	EGF-like domain-containing protein.	Betacellulin, epidermal growth factor family member.	0.536
ENSKMAP00000021818	LOC108235300	ENSKMAP00000021818	ENSKMAP00000028966	EGF-like domain-containing protein.	Erb-b2 receptor tyrosine kinase 3b.	0.675
ENSKMAP00000021818	LOC108238002	ENSKMAP00000021818	ENSKMAP00000019056	EGF-like domain-containing protein.	Neuregulin 2b.	0.501
ENSKMAP00000021818	LOC108242040	ENSKMAP00000021818	ENSKMAP00000025271	EGF-like domain-containing protein.	Heparin-binding EGF-like growth factor a.	0.449
ENSKMAP00000021818	LOC108248942	ENSKMAP00000021818	ENSKMAP00000028565	EGF-like domain-containing protein.	Receptor protein-tyrosine kinase.	0.862
ENSKMAP00000021818	egf	ENSKMAP00000021818	ENSKMAP00000013694	EGF-like domain-containing protein.	Epidermal growth factor.	0.576
ENSKMAP00000021818	egfr	ENSKMAP00000021818	ENSKMAP00000004149	EGF-like domain-containing protein.	Receptor protein-tyrosine kinase.	0.659