70 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSKMAP00000005163	Uncharacterized protein. (495 aa)
	khdrbs3	KH domain-containing protein. (324 aa)
	sfpq	Splicing factor proline/glutamine-rich. (777 aa)
	LOC108230693	Leupaxin. (399 aa)
	LOC108238760	KH domain containing, RNA binding, signal transduction associated 1b. (362 aa)
	ARAP1	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1. (1600 aa)
	LOC108239982	HRas proto-oncogene, GTPase a. (189 aa)
	Nono	Non-POU domain containing, octamer-binding. (443 aa)
	LOC108244154	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (480 aa)
	elmod3	ELMO/CED-12 domain containing 3. (435 aa)
	LOC108240703	Engulfment and cell motility 1. (740 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	egfr	Receptor protein-tyrosine kinase. (1196 aa)
	elmod2	ELMO/CED-12 domain containing 2. (297 aa)
	erbb4	Receptor protein-tyrosine kinase. (1407 aa)
	KRAS	GTPase KRas; Ras proteins bind GDP/GTP and possess intrinsic GTPase activity. Plays an important role in the regulation of cell proliferation. May play a role in promoting oncogenic events by inducing transcriptional silencing of tumor suppressor genes (TSGs). Belongs to the small GTPase superfamily. Ras family. (189 aa)
	LOC108246299	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (479 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	rasa1	RAS p21 protein activator (GTPase activating protein) 1a. (1067 aa)
	CSDE1	Cold shock domain containing E1, RNA-binding. (861 aa)
	kxd1	KxDL motif containing 1. (185 aa)
	LOC108230745	Uncharacterized protein. (379 aa)
	LOC108242850	Docking protein 1b. (681 aa)
	LOC108239426	Signal transducing adaptor family member 2a. (403 aa)
	arhgap35	Uncharacterized protein. (1552 aa)
	elmod1	ELMO/CED-12 domain containing 1. (334 aa)
	LOC108248149	V-crk avian sarcoma virus CT10 oncogene homolog. (307 aa)
	LOC108241808	Tyrosine-protein kinase. (504 aa)
	socs3	Suppressor of cytokine signaling 3. (228 aa)
	LOC108243005	Zgc:55558. (187 aa)
	egf	Epidermal growth factor. (1111 aa)
	ENSKMAP00000014416	Suppressor of cytokine signaling 3a. (201 aa)
	pxn	Uncharacterized protein. (894 aa)
	RNF222	Ring finger protein 222. (269 aa)
	LOC108235488	Cbl proto-oncogene C, E3 ubiquitin protein ligase. (570 aa)
	ubb	Uncharacterized protein. (270 aa)
	LOC108231089	Betacellulin, epidermal growth factor family member. (184 aa)
	LOC108247599	Rho GTPase activating protein 35b. (1486 aa)
	ccnd1	Cyclin D1; Belongs to the cyclin family. (292 aa)
	ccne1	Cyclin E1; Belongs to the cyclin family. (436 aa)
	pspc1	RRM domain-containing protein. (444 aa)
	LOC108238002	Neuregulin 2b. (563 aa)
	ENSKMAP00000019408	Sam68-YY domain-containing protein. (78 aa)
	lrrk2	Leucine-rich repeat kinase 2. (2550 aa)
	LOC108236200	KH domain containing, RNA binding, signal transduction associated 1a. (373 aa)
	LOC108246548	CRK proto-oncogene, adaptor protein. (310 aa)
	LOC108235659	Engulfment and cell motility 2. (721 aa)
	cbl	Cbl proto-oncogene, E3 ubiquitin protein ligase. (950 aa)
	ENSKMAP00000021818	EGF-like domain-containing protein. (279 aa)
	LOC108246056	Crystallin, beta B1, like 3; Belongs to the beta/gamma-crystallin family. (209 aa)
	cdk2	Cyclin-dependent kinase 2; Belongs to the protein kinase superfamily. (298 aa)
	cdk4	Cyclin-dependent kinase 4; Belongs to the protein kinase superfamily. (317 aa)
	LOC108246606	Cyclin-dependent kinase inhibitor 1Bb. (204 aa)
	nrg4	EGF-like domain-containing protein. (106 aa)
	LOC108238085	Uncharacterized protein. (881 aa)
	LOC108249567	Tyrosine-protein phosphatase non-receptor type. (435 aa)
	khdrbs2	KH domain containing, RNA binding, signal transduction associated 2. (343 aa)
	ENSKMAP00000024758	EGF-like domain-containing protein. (118 aa)
	LOC108242040	Heparin-binding EGF-like growth factor a. (234 aa)
	erbb3	Protein kinase domain-containing protein. (1419 aa)
	gpnmb	Glycoprotein (transmembrane) nmb. (624 aa)
	LOC108239857	Uncharacterized protein. (836 aa)
	ENSKMAP00000028192	Uncharacterized protein. (93 aa)
	ENSKMAP00000028224	Erb-b2 receptor tyrosine kinase 4b. (421 aa)
	ENSKMAP00000028283	Protein kinase domain-containing protein. (472 aa)
	LOC108248942	Receptor protein-tyrosine kinase. (1296 aa)
	TGFB1I1	Transforming growth factor beta-1-induced transcript 1 protein; Functions as a molecular adapter coordinating multiple protein-protein interactions at the focal adhesion complex and in the nucleus. Links various intracellular signaling modules to plasma membrane receptors and regulates the Wnt and TGFB signaling pathways. (482 aa)
	LOC108235300	Erb-b2 receptor tyrosine kinase 3b. (1454 aa)
	LOC108237558	Engulfment and cell motility 3. (715 aa)
	LOC108236992	Neuregulin 2a. (707 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARAP1	LOC108241808	ENSKMAP00000002128	ENSKMAP00000012716	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1.	Tyrosine-protein kinase.	0.414
CSDE1	ENSKMAP00000005163	ENSKMAP00000007641	ENSKMAP00000005163	Cold shock domain containing E1, RNA-binding.	Uncharacterized protein.	0.485
CSDE1	ENSKMAP00000028192	ENSKMAP00000007641	ENSKMAP00000028192	Cold shock domain containing E1, RNA-binding.	Uncharacterized protein.	0.485
CSDE1	ENSKMAP00000028224	ENSKMAP00000007641	ENSKMAP00000028224	Cold shock domain containing E1, RNA-binding.	Erb-b2 receptor tyrosine kinase 4b.	0.485
CSDE1	ENSKMAP00000028283	ENSKMAP00000007641	ENSKMAP00000028283	Cold shock domain containing E1, RNA-binding.	Protein kinase domain-containing protein.	0.485
CSDE1	LOC108231089	ENSKMAP00000007641	ENSKMAP00000017182	Cold shock domain containing E1, RNA-binding.	Betacellulin, epidermal growth factor family member.	0.444
CSDE1	LOC108235300	ENSKMAP00000007641	ENSKMAP00000028966	Cold shock domain containing E1, RNA-binding.	Erb-b2 receptor tyrosine kinase 3b.	0.485
CSDE1	LOC108241808	ENSKMAP00000007641	ENSKMAP00000012716	Cold shock domain containing E1, RNA-binding.	Tyrosine-protein kinase.	0.469
CSDE1	LOC108242040	ENSKMAP00000007641	ENSKMAP00000025271	Cold shock domain containing E1, RNA-binding.	Heparin-binding EGF-like growth factor a.	0.438
CSDE1	LOC108248942	ENSKMAP00000007641	ENSKMAP00000028565	Cold shock domain containing E1, RNA-binding.	Receptor protein-tyrosine kinase.	0.485
CSDE1	egf	ENSKMAP00000007641	ENSKMAP00000013694	Cold shock domain containing E1, RNA-binding.	Epidermal growth factor.	0.488
CSDE1	egfr	ENSKMAP00000007641	ENSKMAP00000004149	Cold shock domain containing E1, RNA-binding.	Receptor protein-tyrosine kinase.	0.485
CSDE1	erbb3	ENSKMAP00000007641	ENSKMAP00000026346	Cold shock domain containing E1, RNA-binding.	Protein kinase domain-containing protein.	0.485
CSDE1	erbb4	ENSKMAP00000007641	ENSKMAP00000004699	Cold shock domain containing E1, RNA-binding.	Receptor protein-tyrosine kinase.	0.485
CSDE1	rasa1	ENSKMAP00000007641	ENSKMAP00000006945	Cold shock domain containing E1, RNA-binding.	RAS p21 protein activator (GTPase activating protein) 1a.	0.799
CSDE1	rps27a	ENSKMAP00000007641	ENSKMAP00000004139	Cold shock domain containing E1, RNA-binding.	Ribosomal protein S27a.	0.494
CSDE1	uba52	ENSKMAP00000007641	ENSKMAP00000006381	Cold shock domain containing E1, RNA-binding.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.509
CSDE1	ubb	ENSKMAP00000007641	ENSKMAP00000016559	Cold shock domain containing E1, RNA-binding.	Uncharacterized protein.	0.516
ENSKMAP00000005163	CSDE1	ENSKMAP00000005163	ENSKMAP00000007641	Uncharacterized protein.	Cold shock domain containing E1, RNA-binding.	0.485
ENSKMAP00000005163	ENSKMAP00000021818	ENSKMAP00000005163	ENSKMAP00000021818	Uncharacterized protein.	EGF-like domain-containing protein.	0.659