71 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cep76	Centrosomal protein 76. (662 aa)
	cep131	Centrosomal protein 131. (1091 aa)
	cep78	Centrosomal protein 78. (789 aa)
	fgfr1op	FGFR1 oncogene partner. (526 aa)
	Ckap5	Cytoskeleton associated protein 5. (1072 aa)
	LOC108246231	Ninein-like. (996 aa)
	LOC108241635	Uncharacterized protein. (627 aa)
	sdccag8	Serologically defined colon cancer antigen 8. (696 aa)
	prkar2b	Protein kinase cAMP-dependent type II regulatory subunit beta. (404 aa)
	LOC108233582	Dynein light chain. (89 aa)
	LOC108242815	Outer dense fiber of sperm tails 2b. (738 aa)
	haus1	HAUS augmin-like complex, subunit 1. (307 aa)
	haus6	HAUS6_N domain-containing protein. (794 aa)
	plk4	Polo-like kinase 4 (Drosophila). (931 aa)
	cep135	Centrosomal protein 135. (1154 aa)
	haus7	HAUS augmin-like complex, subunit 7. (329 aa)
	pcm1	Pericentriolar material 1. (1984 aa)
	LOC108242888	Dynactin 1a. (1237 aa)
	cep290	Centrosomal protein 290. (2263 aa)
	LOC108238947	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family. (410 aa)
	ENSKMAP00000009840	Uncharacterized protein. (232 aa)
	haus2	Uncharacterized protein. (191 aa)
	LOC108229678	Uncharacterized protein. (94 aa)
	LOC108236604	Centrin 4. (173 aa)
	sfi1	Uncharacterized protein. (810 aa)
	ssna1	Sjogren syndrome nuclear autoantigen 1. (114 aa)
	LOC108248151	Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 2; Belongs to the 14-3-3 family. (257 aa)
	cep57	Uncharacterized protein. (493 aa)
	dctn1	Dynactin domain-containing protein. (964 aa)
	LOC108243526	Protein phosphatase 2, regulatory subunit A, beta b. (589 aa)
	LOC108228966	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (449 aa)
	ENSKMAP00000013280	A kinase (PRKA) anchor protein 9. (2630 aa)
	LOC108236023	3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 2; Belongs to the 14-3-3 family. (247 aa)
	cep70	Centrosomal protein 70. (514 aa)
	LOC108247550	Si:ch211-242b18.1. (1719 aa)
	ENSKMAP00000014373	CDK5 regulatory subunit associated protein 2. (1099 aa)
	dctn2	Dynactin 2 (p50). (403 aa)
	haus3	HAUS augmin-like complex, subunit 3. (656 aa)
	LOC108235288	Pericentrin. (3589 aa)
	cep41	Centrosomal protein 41. (366 aa)
	aurka	Aurora kinase A; Belongs to the protein kinase superfamily. (424 aa)
	LOC108235881	Casein kinase 1, epsilon; Belongs to the protein kinase superfamily. (440 aa)
	LOC108236914	Dynein light chain. (89 aa)
	LOC108233911	3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 1; Belongs to the 14-3-3 family. (247 aa)
	cenpj	Centromere protein J. (1301 aa)
	tpx2	TPX2 microtubule nucleation factor. (696 aa)
	ENSKMAP00000018871	Centrosomal protein 72. (403 aa)
	csnk1d	Casein kinase 1, delta b; Belongs to the protein kinase superfamily. (405 aa)
	csnk1e	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (417 aa)
	cep63	Centrosomal protein 63. (459 aa)
	cdk1	Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily. (303 aa)
	LOC108246551	14_3_3 domain-containing protein; Belongs to the 14-3-3 family. (255 aa)
	pafah1b1	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family. (410 aa)
	dctn3	Dynactin 3 (p22). (187 aa)
	nedd1	NEDD1 gamma-tubulin ring complex targeting factor. (659 aa)
	ofd1	OFD1 centriole and centriolar satellite protein. (1055 aa)
	Nek2	NIMA-related kinase 2. (492 aa)
	tubg1	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome. (451 aa)
	ccp110	Uncharacterized protein. (836 aa)
	cep152	Centrosomal protein 152. (821 aa)
	ENSKMAP00000025178	Uncharacterized protein. (431 aa)
	LOC108231826	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2. (732 aa)
	LOC108231827	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1. (724 aa)
	mapre1	Microtubule-associated protein, RP/EB family, member 1b. (296 aa)
	LOC108240438	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (449 aa)
	fopnl	Fgfr1op N-terminal like. (104 aa)
	NDE1	NudE neurodevelopment protein 1. (315 aa)
	cep164	WW domain-containing protein. (1615 aa)
	crocc	Uncharacterized protein. (1698 aa)
	cep192	Centrosomal protein 192. (2754 aa)
	haus8	Uncharacterized protein. (366 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ckap5	ENSKMAP00000013280	ENSKMAP00000003100	ENSKMAP00000013280	Cytoskeleton associated protein 5.	A kinase (PRKA) anchor protein 9.	0.561
Ckap5	ENSKMAP00000014373	ENSKMAP00000003100	ENSKMAP00000014373	Cytoskeleton associated protein 5.	CDK5 regulatory subunit associated protein 2.	0.514
Ckap5	ENSKMAP00000025178	ENSKMAP00000003100	ENSKMAP00000025178	Cytoskeleton associated protein 5.	Uncharacterized protein.	0.442
Ckap5	LOC108228966	ENSKMAP00000003100	ENSKMAP00000012793	Cytoskeleton associated protein 5.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.594
Ckap5	LOC108235288	ENSKMAP00000003100	ENSKMAP00000016680	Cytoskeleton associated protein 5.	Pericentrin.	0.561
Ckap5	LOC108238947	ENSKMAP00000003100	ENSKMAP00000008894	Cytoskeleton associated protein 5.	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family.	0.599
Ckap5	LOC108240438	ENSKMAP00000003100	ENSKMAP00000027959	Cytoskeleton associated protein 5.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.594
Ckap5	LOC108247550	ENSKMAP00000003100	ENSKMAP00000014146	Cytoskeleton associated protein 5.	Si:ch211-242b18.1.	0.514
Ckap5	aurka	ENSKMAP00000003100	ENSKMAP00000017471	Cytoskeleton associated protein 5.	Aurora kinase A; Belongs to the protein kinase superfamily.	0.676
Ckap5	cdk1	ENSKMAP00000003100	ENSKMAP00000020171	Cytoskeleton associated protein 5.	Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.	0.626
Ckap5	cenpj	ENSKMAP00000003100	ENSKMAP00000018115	Cytoskeleton associated protein 5.	Centromere protein J.	0.569
Ckap5	cep290	ENSKMAP00000003100	ENSKMAP00000008634	Cytoskeleton associated protein 5.	Centrosomal protein 290.	0.442
Ckap5	dctn2	ENSKMAP00000003100	ENSKMAP00000016534	Cytoskeleton associated protein 5.	Dynactin 2 (p50).	0.468
Ckap5	haus2	ENSKMAP00000003100	ENSKMAP00000010237	Cytoskeleton associated protein 5.	Uncharacterized protein.	0.500
Ckap5	haus3	ENSKMAP00000003100	ENSKMAP00000016575	Cytoskeleton associated protein 5.	HAUS augmin-like complex, subunit 3.	0.494
Ckap5	haus6	ENSKMAP00000003100	ENSKMAP00000005951	Cytoskeleton associated protein 5.	HAUS6_N domain-containing protein.	0.619
Ckap5	haus8	ENSKMAP00000003100	ENSKMAP00000000901	Cytoskeleton associated protein 5.	Uncharacterized protein.	0.500
Ckap5	mapre1	ENSKMAP00000003100	ENSKMAP00000027380	Cytoskeleton associated protein 5.	Microtubule-associated protein, RP/EB family, member 1b.	0.837
Ckap5	nedd1	ENSKMAP00000003100	ENSKMAP00000023828	Cytoskeleton associated protein 5.	NEDD1 gamma-tubulin ring complex targeting factor.	0.405
Ckap5	pafah1b1	ENSKMAP00000003100	ENSKMAP00000021384	Cytoskeleton associated protein 5.	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family.	0.599