36 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108233791	Nucleophosmin 1a. (291 aa)
	esr1	Estrogen receptor; The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues. (643 aa)
	LOC108246951	BTB domain-containing protein. (290 aa)
	LOC108236678	Nucleophosmin 1b. (294 aa)
	LOC108245185	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4a. (231 aa)
	LOC108246349	Bromo domain-containing protein. (1268 aa)
	NOP2	NOP2 nucleolar protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (753 aa)
	LOC108250440	E1A binding protein p300 a. (2399 aa)
	mybl2	V-myb avian myeloblastosis viral oncogene homolog-like 2b. (634 aa)
	LOC108245161	Luteinizing hormone, beta polypeptide. (164 aa)
	tfap2a	Transcription factor AP-2 alpha. (432 aa)
	LOC108232066	Lysine (K)-specific demethylase 5Bb. (1541 aa)
	KCTD15	Potassium channel tetramerization domain containing 15. (264 aa)
	atad2b	ATPase family AAA domain containing 2B. (1454 aa)
	LOC108228693	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1. (183 aa)
	tfap2b	Transcription factor AP-2 beta. (445 aa)
	tfap2d	Transcription factor AP-2 delta (activating enhancer binding protein 2 delta). (458 aa)
	atad2	Bromo domain-containing protein. (1481 aa)
	LOC108241482	CREB binding protein a. (2490 aa)
	tfap2e	Transcription factor AP-2 epsilon. (423 aa)
	pitx1	Homeobox protein. (315 aa)
	LOC108239172	Homeobox protein. (294 aa)
	LOC108236207	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
	LOC108235655	Lysine (K)-specific demethylase 5Ba. (1485 aa)
	myc	Transcriptional regulator; Transcription factor that binds DNA in a non-specific manner, yet also specifically recognizes the core sequence 5'-CAC[GA]TG-3'. Activates the transcription of growth-related genes. (387 aa)
	ep300	E1A binding protein p300 b. (2785 aa)
	yeats4	YEATS domain containing 4. (224 aa)
	LOC108247643	CREB binding protein b. (2428 aa)
	tfap2c	Transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma). (471 aa)
	KCTD1	Potassium channel tetramerization domain containing 1. (342 aa)
	ube2i	Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
	wwox	WW domain containing oxidoreductase. (411 aa)
	LOC108236724	Uncharacterized protein. (888 aa)
	sumo1	Small ubiquitin-related modifier. (105 aa)
	LOC108250610	DEK proto-oncogene. (328 aa)
	pitx2	Homeobox protein. (312 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KCTD1	LOC108236207	ENSKMAP00000018716	ENSKMAP00000021963	Potassium channel tetramerization domain containing 1.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.628
KCTD1	tfap2a	ENSKMAP00000018716	ENSKMAP00000006572	Potassium channel tetramerization domain containing 1.	Transcription factor AP-2 alpha.	0.596
KCTD1	tfap2b	ENSKMAP00000018716	ENSKMAP00000030034	Potassium channel tetramerization domain containing 1.	Transcription factor AP-2 beta.	0.596
KCTD1	tfap2c	ENSKMAP00000018716	ENSKMAP00000018863	Potassium channel tetramerization domain containing 1.	Transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma).	0.596
KCTD1	tfap2d	ENSKMAP00000018716	ENSKMAP00000030031	Potassium channel tetramerization domain containing 1.	Transcription factor AP-2 delta (activating enhancer binding protein 2 delta).	0.657
KCTD1	tfap2e	ENSKMAP00000018716	ENSKMAP00000025266	Potassium channel tetramerization domain containing 1.	Transcription factor AP-2 epsilon.	0.596
KCTD1	ube2i	ENSKMAP00000018716	ENSKMAP00000016252	Potassium channel tetramerization domain containing 1.	Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family.	0.628
KCTD15	LOC108236207	ENSKMAP00000001886	ENSKMAP00000021963	Potassium channel tetramerization domain containing 15.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.628
KCTD15	tfap2a	ENSKMAP00000001886	ENSKMAP00000006572	Potassium channel tetramerization domain containing 15.	Transcription factor AP-2 alpha.	0.596
KCTD15	tfap2b	ENSKMAP00000001886	ENSKMAP00000030034	Potassium channel tetramerization domain containing 15.	Transcription factor AP-2 beta.	0.596
KCTD15	tfap2c	ENSKMAP00000001886	ENSKMAP00000018863	Potassium channel tetramerization domain containing 15.	Transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma).	0.596
KCTD15	tfap2d	ENSKMAP00000001886	ENSKMAP00000030031	Potassium channel tetramerization domain containing 15.	Transcription factor AP-2 delta (activating enhancer binding protein 2 delta).	0.657
KCTD15	tfap2e	ENSKMAP00000001886	ENSKMAP00000025266	Potassium channel tetramerization domain containing 15.	Transcription factor AP-2 epsilon.	0.596
KCTD15	ube2i	ENSKMAP00000001886	ENSKMAP00000016252	Potassium channel tetramerization domain containing 15.	Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family.	0.628
LOC108228693	LOC108241482	ENSKMAP00000004011	ENSKMAP00000026436	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1.	CREB binding protein a.	0.814
LOC108228693	LOC108247643	ENSKMAP00000004011	ENSKMAP00000019200	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1.	CREB binding protein b.	0.814
LOC108228693	LOC108250440	ENSKMAP00000004011	ENSKMAP00000008734	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1.	E1A binding protein p300 a.	0.760
LOC108228693	ep300	ENSKMAP00000004011	ENSKMAP00000020640	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1.	E1A binding protein p300 b.	0.760
LOC108228693	esr1	ENSKMAP00000004011	ENSKMAP00000012500	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1.	Estrogen receptor; The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues.	0.451
LOC108228693	tfap2a	ENSKMAP00000004011	ENSKMAP00000006572	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1.	Transcription factor AP-2 alpha.	0.407