13 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tfap2b	Transcription factor AP-2 beta. (445 aa)
	LOC108228693	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1. (183 aa)
	tfap2a	Transcription factor AP-2 alpha. (432 aa)
	LOC108250440	E1A binding protein p300 a. (2399 aa)
	tfap2d	Transcription factor AP-2 delta (activating enhancer binding protein 2 delta). (458 aa)
	LOC108241482	CREB binding protein a. (2490 aa)
	tfap2e	Transcription factor AP-2 epsilon. (423 aa)
	ep300	E1A binding protein p300 b. (2785 aa)
	yeats4	YEATS domain containing 4. (224 aa)
	LOC108247643	CREB binding protein b. (2428 aa)
	tfap2c	Transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma). (471 aa)
	wwox	WW domain containing oxidoreductase. (411 aa)
	LOC108245185	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4a. (231 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108228693	LOC108241482	ENSKMAP00000004011	ENSKMAP00000026436	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1.	CREB binding protein a.	0.814
LOC108228693	LOC108247643	ENSKMAP00000004011	ENSKMAP00000019200	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1.	CREB binding protein b.	0.814
LOC108228693	LOC108250440	ENSKMAP00000004011	ENSKMAP00000008734	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1.	E1A binding protein p300 a.	0.760
LOC108228693	ep300	ENSKMAP00000004011	ENSKMAP00000020640	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1.	E1A binding protein p300 b.	0.760
LOC108228693	tfap2a	ENSKMAP00000004011	ENSKMAP00000006572	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1.	Transcription factor AP-2 alpha.	0.407
LOC108228693	tfap2b	ENSKMAP00000004011	ENSKMAP00000030034	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1.	Transcription factor AP-2 beta.	0.407
LOC108228693	tfap2c	ENSKMAP00000004011	ENSKMAP00000018863	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1.	Transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma).	0.407
LOC108228693	tfap2d	ENSKMAP00000004011	ENSKMAP00000030031	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1.	Transcription factor AP-2 delta (activating enhancer binding protein 2 delta).	0.460
LOC108228693	tfap2e	ENSKMAP00000004011	ENSKMAP00000025266	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1.	Transcription factor AP-2 epsilon.	0.407
LOC108241482	LOC108228693	ENSKMAP00000026436	ENSKMAP00000004011	CREB binding protein a.	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1.	0.814
LOC108241482	LOC108245185	ENSKMAP00000026436	ENSKMAP00000009970	CREB binding protein a.	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4a.	0.875
LOC108241482	LOC108247643	ENSKMAP00000026436	ENSKMAP00000019200	CREB binding protein a.	CREB binding protein b.	0.901
LOC108241482	LOC108250440	ENSKMAP00000026436	ENSKMAP00000008734	CREB binding protein a.	E1A binding protein p300 a.	0.928
LOC108241482	ep300	ENSKMAP00000026436	ENSKMAP00000020640	CREB binding protein a.	E1A binding protein p300 b.	0.992
LOC108241482	tfap2d	ENSKMAP00000026436	ENSKMAP00000030031	CREB binding protein a.	Transcription factor AP-2 delta (activating enhancer binding protein 2 delta).	0.542
LOC108245185	LOC108241482	ENSKMAP00000009970	ENSKMAP00000026436	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4a.	CREB binding protein a.	0.875
LOC108245185	LOC108247643	ENSKMAP00000009970	ENSKMAP00000019200	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4a.	CREB binding protein b.	0.875
LOC108245185	LOC108250440	ENSKMAP00000009970	ENSKMAP00000008734	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4a.	E1A binding protein p300 a.	0.916
LOC108245185	ep300	ENSKMAP00000009970	ENSKMAP00000020640	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4a.	E1A binding protein p300 b.	0.916
LOC108245185	tfap2a	ENSKMAP00000009970	ENSKMAP00000006572	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4a.	Transcription factor AP-2 alpha.	0.576