18 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Arl4a	ADP-ribosylation factor-like 4aa. (193 aa)
	abca2	ATP-binding cassette, sub-family A (ABC1), member 2. (2519 aa)
	nr1h3	Nuclear receptor subfamily 1, group H, member 3. (464 aa)
	LOC108238308	Transducin (beta)-like 1 X-linked receptor 1b. (512 aa)
	LOC108250440	E1A binding protein p300 a. (2399 aa)
	HDAC3	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes. (428 aa)
	arl4c	ADP-ribosylation factor-like 4Cb; Belongs to the small GTPase superfamily. Arf family. (192 aa)
	ncor1	Nuclear receptor corepressor 1. (2321 aa)
	ep300	E1A binding protein p300 b. (2785 aa)
	LOC108241994	Retinoid x receptor, beta b. (427 aa)
	rxra	Retinoid X receptor, alpha a. (496 aa)
	ncoa1	Nuclear receptor coactivator 1. (1473 aa)
	LOC108239707	Transducin beta like 1 X-linked. (513 aa)
	LOC108248967	Uncharacterized protein. (2290 aa)
	ncor2	Nuclear receptor corepressor 2. (1795 aa)
	abca1	ATP-binding cassette, sub-family A (ABC1), member 1A. (2243 aa)
	RXRB	Retinoid X receptor beta. (469 aa)
	gps2	G protein pathway suppressor 2. (328 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HDAC3	LOC108238308	ENSKMAP00000008945	ENSKMAP00000005490	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Transducin (beta)-like 1 X-linked receptor 1b.	0.877
HDAC3	LOC108239707	ENSKMAP00000008945	ENSKMAP00000024263	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Transducin beta like 1 X-linked.	0.877
HDAC3	LOC108241994	ENSKMAP00000008945	ENSKMAP00000022068	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Retinoid x receptor, beta b.	0.513
HDAC3	LOC108250440	ENSKMAP00000008945	ENSKMAP00000008734	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	E1A binding protein p300 a.	0.675
HDAC3	RXRB	ENSKMAP00000008945	ENSKMAP00000028761	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Retinoid X receptor beta.	0.513
HDAC3	ep300	ENSKMAP00000008945	ENSKMAP00000020640	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	E1A binding protein p300 b.	0.675
HDAC3	gps2	ENSKMAP00000008945	ENSKMAP00000029801	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	G protein pathway suppressor 2.	0.585
HDAC3	ncor1	ENSKMAP00000008945	ENSKMAP00000016456	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Nuclear receptor corepressor 1.	0.948
HDAC3	ncor2	ENSKMAP00000008945	ENSKMAP00000026676	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Nuclear receptor corepressor 2.	0.948
HDAC3	nr1h3	ENSKMAP00000008945	ENSKMAP00000003552	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Nuclear receptor subfamily 1, group H, member 3.	0.603
HDAC3	rxra	ENSKMAP00000008945	ENSKMAP00000022576	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Retinoid X receptor, alpha a.	0.513
LOC108238308	HDAC3	ENSKMAP00000005490	ENSKMAP00000008945	Transducin (beta)-like 1 X-linked receptor 1b.	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.877
LOC108238308	LOC108239707	ENSKMAP00000005490	ENSKMAP00000024263	Transducin (beta)-like 1 X-linked receptor 1b.	Transducin beta like 1 X-linked.	0.944
LOC108238308	LOC108241994	ENSKMAP00000005490	ENSKMAP00000022068	Transducin (beta)-like 1 X-linked receptor 1b.	Retinoid x receptor, beta b.	0.427
LOC108238308	LOC108250440	ENSKMAP00000005490	ENSKMAP00000008734	Transducin (beta)-like 1 X-linked receptor 1b.	E1A binding protein p300 a.	0.428
LOC108238308	RXRB	ENSKMAP00000005490	ENSKMAP00000028761	Transducin (beta)-like 1 X-linked receptor 1b.	Retinoid X receptor beta.	0.427
LOC108238308	ep300	ENSKMAP00000005490	ENSKMAP00000020640	Transducin (beta)-like 1 X-linked receptor 1b.	E1A binding protein p300 b.	0.428
LOC108238308	ncoa1	ENSKMAP00000005490	ENSKMAP00000022890	Transducin (beta)-like 1 X-linked receptor 1b.	Nuclear receptor coactivator 1.	0.402
LOC108238308	ncor1	ENSKMAP00000005490	ENSKMAP00000016456	Transducin (beta)-like 1 X-linked receptor 1b.	Nuclear receptor corepressor 1.	0.914
LOC108238308	ncor2	ENSKMAP00000005490	ENSKMAP00000026676	Transducin (beta)-like 1 X-linked receptor 1b.	Nuclear receptor corepressor 2.	0.914