10 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108250440	E1A binding protein p300 a. (2399 aa)
	foxo3	Forkhead box O3b. (663 aa)
	kat2b	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily. (792 aa)
	foxo1	Forkhead box O1 a. (667 aa)
	sirt3	NAD-dependent protein deacetylase; NAD-dependent protein deacetylase. (355 aa)
	LOC108241482	CREB binding protein a. (2490 aa)
	ep300	E1A binding protein p300 b. (2785 aa)
	LOC108247643	CREB binding protein b. (2428 aa)
	LOC108239958	Si:dkey-103i16.6. (448 aa)
	sirt1	Sirtuin 1. (693 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108239958	foxo1	ENSKMAP00000006975	ENSKMAP00000006467	Si:dkey-103i16.6.	Forkhead box O1 a.	0.585
LOC108239958	foxo3	ENSKMAP00000006975	ENSKMAP00000011193	Si:dkey-103i16.6.	Forkhead box O3b.	0.585
LOC108239958	sirt1	ENSKMAP00000006975	ENSKMAP00000011175	Si:dkey-103i16.6.	Sirtuin 1.	0.653
LOC108241482	LOC108247643	ENSKMAP00000026436	ENSKMAP00000019200	CREB binding protein a.	CREB binding protein b.	0.901
LOC108241482	LOC108250440	ENSKMAP00000026436	ENSKMAP00000008734	CREB binding protein a.	E1A binding protein p300 a.	0.928
LOC108241482	ep300	ENSKMAP00000026436	ENSKMAP00000020640	CREB binding protein a.	E1A binding protein p300 b.	0.992
LOC108241482	foxo1	ENSKMAP00000026436	ENSKMAP00000006467	CREB binding protein a.	Forkhead box O1 a.	0.727
LOC108241482	foxo3	ENSKMAP00000026436	ENSKMAP00000011193	CREB binding protein a.	Forkhead box O3b.	0.713
LOC108241482	kat2b	ENSKMAP00000026436	ENSKMAP00000006702	CREB binding protein a.	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.	0.973
LOC108241482	sirt1	ENSKMAP00000026436	ENSKMAP00000011175	CREB binding protein a.	Sirtuin 1.	0.597
LOC108247643	LOC108241482	ENSKMAP00000019200	ENSKMAP00000026436	CREB binding protein b.	CREB binding protein a.	0.901
LOC108247643	LOC108250440	ENSKMAP00000019200	ENSKMAP00000008734	CREB binding protein b.	E1A binding protein p300 a.	0.928
LOC108247643	ep300	ENSKMAP00000019200	ENSKMAP00000020640	CREB binding protein b.	E1A binding protein p300 b.	0.992
LOC108247643	foxo1	ENSKMAP00000019200	ENSKMAP00000006467	CREB binding protein b.	Forkhead box O1 a.	0.727
LOC108247643	foxo3	ENSKMAP00000019200	ENSKMAP00000011193	CREB binding protein b.	Forkhead box O3b.	0.748
LOC108247643	kat2b	ENSKMAP00000019200	ENSKMAP00000006702	CREB binding protein b.	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.	0.973
LOC108247643	sirt1	ENSKMAP00000019200	ENSKMAP00000011175	CREB binding protein b.	Sirtuin 1.	0.597
LOC108250440	LOC108241482	ENSKMAP00000008734	ENSKMAP00000026436	E1A binding protein p300 a.	CREB binding protein a.	0.928
LOC108250440	LOC108247643	ENSKMAP00000008734	ENSKMAP00000019200	E1A binding protein p300 a.	CREB binding protein b.	0.928
LOC108250440	foxo1	ENSKMAP00000008734	ENSKMAP00000006467	E1A binding protein p300 a.	Forkhead box O1 a.	0.700