33 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ubb	Uncharacterized protein. (270 aa)
	LOC108249401	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (453 aa)
	prkcq	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (720 aa)
	ZDHHC14	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (491 aa)
	lypla1	Lysophospholipase 1. (232 aa)
	churc1	Churchill domain containing 1. (112 aa)
	bcl2l1	BCL2 like 1. (232 aa)
	abhd17c	Abhydrolase domain containing 17C. (294 aa)
	LOC108233508	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding. (430 aa)
	zdhhc18	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (460 aa)
	LOC108230834	Abhydrolase domain containing 17A. (321 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	LOC108244384	BH4_2 domain-containing protein. (218 aa)
	LOC108233950	Golgin A7 family member B. (158 aa)
	icmt	Protein-S-isoprenylcysteine O-methyltransferase. (291 aa)
	LOC108239982	HRas proto-oncogene, GTPase a. (189 aa)
	GOLGA7B	Golgin A7 family, member Ba. (158 aa)
	LOC108239816	Golgin A7. (144 aa)
	zdhhc9	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (391 aa)
	KRAS	GTPase KRas; Ras proteins bind GDP/GTP and possess intrinsic GTPase activity. Plays an important role in the regulation of cell proliferation. May play a role in promoting oncogenic events by inducing transcriptional silencing of tumor suppressor genes (TSGs). Belongs to the small GTPase superfamily. Ras family. (189 aa)
	fnta	Farnesyltransferase, CAAX box, alpha. (387 aa)
	CSDE1	Cold shock domain containing E1, RNA-binding. (861 aa)
	kxd1	KxDL motif containing 1. (185 aa)
	abhd17b	Abhydrolase domain containing 17B. (288 aa)
	rce1	Ras converting CAAX endopeptidase 1a. (321 aa)
	arl2	ADP-ribosylation factor-like 2; Belongs to the small GTPase superfamily. Arf family. (184 aa)
	LOC108239535	Peptidase_S9 domain-containing protein. (364 aa)
	LOC108248725	Erf4 domain-containing protein. (141 aa)
	ENSKMAP00000011143	Uncharacterized protein. (176 aa)
	Usp42	USP domain-containing protein; Belongs to the peptidase C19 family. (218 aa)
	pde6d	Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta; Promotes the release of prenylated target proteins from cellular membranes. Modulates the activity of prenylated or palmitoylated Ras family members by regulating their subcellular location. Required for normal ciliary targeting of farnesylated target proteins, such as INPP5E. Modulates the subcellular location of target proteins by acting as a GTP specific dissociation inhibitor (GDI). Increases the affinity of ARL3 for GTP by several orders of magnitude. Stabilizes ARL3-GTP by decreasing the nucleotide [...] (150 aa)
	LOC108243005	Zgc:55558. (187 aa)
	usp36	Ubiquitin specific peptidase 36; Belongs to the peptidase C19 family. (1139 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSDE1	ENSKMAP00000011143	ENSKMAP00000007641	ENSKMAP00000011143	Cold shock domain containing E1, RNA-binding.	Uncharacterized protein.	0.466
CSDE1	LOC108233508	ENSKMAP00000007641	ENSKMAP00000027523	Cold shock domain containing E1, RNA-binding.	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	0.514
CSDE1	LOC108244384	ENSKMAP00000007641	ENSKMAP00000028413	Cold shock domain containing E1, RNA-binding.	BH4_2 domain-containing protein.	0.525
CSDE1	LOC108249401	ENSKMAP00000007641	ENSKMAP00000017186	Cold shock domain containing E1, RNA-binding.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.407
CSDE1	ZDHHC14	ENSKMAP00000007641	ENSKMAP00000019519	Cold shock domain containing E1, RNA-binding.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.407
CSDE1	arl2	ENSKMAP00000007641	ENSKMAP00000009495	Cold shock domain containing E1, RNA-binding.	ADP-ribosylation factor-like 2; Belongs to the small GTPase superfamily. Arf family.	0.478
CSDE1	bcl2l1	ENSKMAP00000007641	ENSKMAP00000023745	Cold shock domain containing E1, RNA-binding.	BCL2 like 1.	0.525
CSDE1	churc1	ENSKMAP00000007641	ENSKMAP00000023649	Cold shock domain containing E1, RNA-binding.	Churchill domain containing 1.	0.514
CSDE1	fnta	ENSKMAP00000007641	ENSKMAP00000005832	Cold shock domain containing E1, RNA-binding.	Farnesyltransferase, CAAX box, alpha.	0.520
CSDE1	icmt	ENSKMAP00000007641	ENSKMAP00000003037	Cold shock domain containing E1, RNA-binding.	Protein-S-isoprenylcysteine O-methyltransferase.	0.571
CSDE1	lypla1	ENSKMAP00000007641	ENSKMAP00000020541	Cold shock domain containing E1, RNA-binding.	Lysophospholipase 1.	0.403
CSDE1	pde6d	ENSKMAP00000007641	ENSKMAP00000011957	Cold shock domain containing E1, RNA-binding.	Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta; Promotes the release of prenylated target proteins from cellular membranes. Modulates the activity of prenylated or palmitoylated Ras family members by regulating their subcellular location. Required for normal ciliary targeting of farnesylated target proteins, such as INPP5E. Modulates the subcellular location of target proteins by acting as a GTP specific dissociation inhibitor (GDI). Increases the affinity of ARL3 for GTP by several orders of magnitude. Stabilizes ARL3-GTP by decreasing the nucleotide [...]	0.698
CSDE1	prkcq	ENSKMAP00000007641	ENSKMAP00000019454	Cold shock domain containing E1, RNA-binding.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.504
CSDE1	rce1	ENSKMAP00000007641	ENSKMAP00000009431	Cold shock domain containing E1, RNA-binding.	Ras converting CAAX endopeptidase 1a.	0.549
CSDE1	rps27a	ENSKMAP00000007641	ENSKMAP00000004139	Cold shock domain containing E1, RNA-binding.	Ribosomal protein S27a.	0.494
CSDE1	ubb	ENSKMAP00000007641	ENSKMAP00000016559	Cold shock domain containing E1, RNA-binding.	Uncharacterized protein.	0.516
CSDE1	zdhhc18	ENSKMAP00000007641	ENSKMAP00000027769	Cold shock domain containing E1, RNA-binding.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.407
CSDE1	zdhhc9	ENSKMAP00000007641	ENSKMAP00000001076	Cold shock domain containing E1, RNA-binding.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.407
ENSKMAP00000011143	CSDE1	ENSKMAP00000011143	ENSKMAP00000007641	Uncharacterized protein.	Cold shock domain containing E1, RNA-binding.	0.466
ENSKMAP00000011143	KRAS	ENSKMAP00000011143	ENSKMAP00000005296	Uncharacterized protein.	GTPase KRas; Ras proteins bind GDP/GTP and possess intrinsic GTPase activity. Plays an important role in the regulation of cell proliferation. May play a role in promoting oncogenic events by inducing transcriptional silencing of tumor suppressor genes (TSGs). Belongs to the small GTPase superfamily. Ras family.	0.466