STRINGSTRING
LOC108231707 LOC108231707 usp30 usp30 sqstm1 sqstm1 pex5l pex5l ENSKMAP00000000467 ENSKMAP00000000467 Atm Atm rps27a rps27a uba52 uba52 LOC108228793 LOC108228793 nbr1 nbr1 kxd1 kxd1 pex5 pex5 ILRUN ILRUN ubb ubb LOC108245360 LOC108245360
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC108231707Inflammation and lipid regulator with UBA-like and NBR1-like domains. (283 aa)
usp30Ubiquitin carboxyl-terminal hydrolase. (522 aa)
sqstm1Sequestosome 1. (430 aa)
pex5lPeroxisomal biogenesis factor 5-like a. (621 aa)
ENSKMAP00000000467TAN domain-containing protein. (123 aa)
AtmUncharacterized protein. (130 aa)
rps27aRibosomal protein S27a. (156 aa)
uba52Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
LOC108228793Peroxisomal biogenesis factor 5-like b. (557 aa)
nbr1NBR1 autophagy cargo receptor a. (1060 aa)
kxd1KxDL motif containing 1. (185 aa)
pex5Peroxisomal biogenesis factor 5. (680 aa)
ILRUNInflammation and lipid regulator with UBA-like and NBR1-like domains. (287 aa)
ubbUncharacterized protein. (270 aa)
LOC108245360NBR1 autophagy cargo receptor b. (812 aa)
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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