STRINGSTRING
gatad2b gatad2b mta2 mta2 gatad2a gatad2a trim33 trim33 ENSKMAP00000004601 ENSKMAP00000004601 LOC108230843 LOC108230843 LOC108238745 LOC108238745 setdb1 setdb1 LOC108233456 LOC108233456 LOC108239220 LOC108239220 LOC108238155 LOC108238155 LOC108240358 LOC108240358 LOC108240354 LOC108240354 chd3 chd3 LOC108242669 LOC108242669 cbx3 cbx3 dnmt1 dnmt1 LOC108241914 LOC108241914 LOC108232401 LOC108232401 dnmt3a dnmt3a HDAC1 HDAC1 LOC108245315 LOC108245315 mta1 mta1 mta3 mta3 LOC108239474 LOC108239474 LOC108251019 LOC108251019
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
gatad2bGATA zinc finger domain containing 2B. (658 aa)
mta2Metastasis associated 1 family, member 2. (665 aa)
gatad2aGATA zinc finger domain containing 2Ab. (639 aa)
trim33Tripartite motif containing 33. (1186 aa)
ENSKMAP00000004601Methyl-CpG binding domain protein 3b; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (676 aa)
LOC108230843Methyl-CpG binding domain protein 3a. (297 aa)
LOC108238745Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes. (482 aa)
setdb1SET domain bifurcated histone lysine methyltransferase 1b. (1267 aa)
LOC108233456DNA (cytosine-5-)-methyltransferase 3 alpha a; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (843 aa)
LOC108239220Trinucleotide repeat containing adaptor 6C1. (1761 aa)
LOC108238155Protein argonaute-2; Required for RNA-mediated gene silencing (RNAi) by the RNA- induced silencing complex (RISC). The 'minimal RISC' appears to include ago2 bound to a short guide RNA such as a microRNA (miRNA) or short interfering RNA (siRNA). These guide RNAs direct RISC to complementary mRNAs that are targets for RISC-mediated gene silencing. The precise mechanism of gene silencing depends on the degree of complementarity between the miRNA or siRNA and its target. Binding of RISC to a perfectly complementary mRNA generally results in silencing due to endonucleolytic cleavage of the [...] (855 aa)
LOC108240358Protein argonaute-3; Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs; Belongs to the argonaute family. Ago subfamily. (867 aa)
LOC108240354Argonaute RISC component 1; Belongs to the argonaute family. (858 aa)
chd3Chromodomain helicase DNA binding protein 3. (1811 aa)
LOC108242669Chromodomain helicase DNA binding protein 4a. (1769 aa)
cbx3Chromobox homolog 3a (HP1 gamma homolog, Drosophila). (172 aa)
dnmt1DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (1507 aa)
LOC108241914Chromobox homolog 3b. (193 aa)
LOC108232401Retinoblastoma binding protein 4. (424 aa)
dnmt3aDNA (cytosine-5-)-methyltransferase 3 alpha b; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (985 aa)
HDAC1Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes. (488 aa)
LOC108245315Trinucleotide repeat containing adaptor 6C2. (1582 aa)
mta1Metastasis associated 1. (619 aa)
mta3Metastasis associated 1 family, member 3. (700 aa)
LOC108239474Uncharacterized protein. (243 aa)
LOC108251019Methyl-CpG binding domain protein 2. (266 aa)
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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