51 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rere	Arginine-glutamic acid dipeptide (RE) repeats a. (1545 aa)
	dnajc1	DnaJ (Hsp40) homolog, subfamily C, member 1. (514 aa)
	mier3	Mesoderm induction early response 1, family member 3 b. (553 aa)
	LOC108235123	Zgc:113263. (1297 aa)
	mybl1	V-myb avian myeloblastosis viral oncogene homolog-like 1. (713 aa)
	dmap1	DNA methyltransferase 1 associated protein 1. (483 aa)
	cdc5l	CDC5 cell division cycle 5-like (S. pombe). (810 aa)
	RCOR1	REST corepressor 1. (392 aa)
	mta1	Metastasis associated 1. (619 aa)
	terf1	Telomeric repeat-binding factor; Binds the telomeric double-stranded 5'-TTAGGG-3' repeat. (366 aa)
	cramp1	Cramped chromatin regulator homolog 1. (1177 aa)
	rcor2	REST corepressor 2. (549 aa)
	rcor3	REST corepressor 3. (561 aa)
	LOC108230564	Mesoderm induction early response 1, family member 2. (455 aa)
	smarcc1	Uncharacterized protein. (1144 aa)
	ENSKMAP00000001590	Uncharacterized protein. (196 aa)
	gon4l	Si:dkey-27c15.3. (1379 aa)
	LOC108237815	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1b. (944 aa)
	accs	Aminotran_1_2 domain-containing protein. (976 aa)
	mysm1	Myb-like, SWIRM and MPN domains 1. (791 aa)
	tada2b	Transcriptional adapter. (420 aa)
	smarca5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5. (1035 aa)
	LOC108234834	Uncharacterized protein. (1019 aa)
	LOC108246840	Uncharacterized protein. (739 aa)
	LOC108243405	AIRC domain-containing protein. (1028 aa)
	mier1	Mesoderm induction early response 1b, transcriptional regulator. (502 aa)
	chd8	Chromodomain-helicase-DNA-binding protein 8; DNA helicase that acts as a chromatin remodeling factor and regulates transcription. Acts as a transcription repressor by remodeling chromatin structure and recruiting histone H1 to target genes. Suppresses p53/TP53-mediated apoptosis by recruiting histone H1 and preventing p53/TP53 transactivation activity. Acts as a negative regulator of Wnt signaling pathway by regulating beta-catenin (CTNNB1) activity. Negatively regulates CTNNB1-targeted gene expression by being recruited specifically to the promoter regions of several CTNNB1 responsive [...] (2616 aa)
	mybl2	V-myb avian myeloblastosis viral oncogene homolog-like 2b. (634 aa)
	mta2	Metastasis associated 1 family, member 2. (665 aa)
	ENSKMAP00000006990	Myb-like domain-containing protein. (390 aa)
	snapc4	Uncharacterized protein. (1582 aa)
	dmtf1	Cyclin D binding myb-like transcription factor 1. (637 aa)
	elmsan1	ELM2 and Myb/SANT-like domain containing 1b. (1064 aa)
	LOC108231352	Arginine-glutamic acid dipeptide (RE) repeats b. (1088 aa)
	ncor2	Nuclear receptor corepressor 2. (1795 aa)
	cunh17orf49	Zgc:103508. (211 aa)
	tada2a	Transcriptional adapter. (445 aa)
	EZH1	Enhancer of zeste 1 polycomb repressive complex 2 subunit. (765 aa)
	smarcc2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2. (1049 aa)
	zzz3	Zinc finger, ZZ-type containing 3. (1194 aa)
	terb1	Telomere repeat binding bouquet formation protein 1. (806 aa)
	ncor1	Nuclear receptor corepressor 1. (2321 aa)
	myb	V-myb avian myeloblastosis viral oncogene homolog. (606 aa)
	Dnajc2	DnaJ (Hsp40) homolog, subfamily C, member 2. (272 aa)
	LOC108236724	Uncharacterized protein. (888 aa)
	mta3	Metastasis associated 1 family, member 3. (700 aa)
	chd7	Chromodomain helicase DNA binding protein 7. (3319 aa)
	terf2	HTH myb-type domain-containing protein. (603 aa)
	ezh2	Enhancer of zeste 2 polycomb repressive complex 2 subunit. (759 aa)
	ENSKMAP00000023793	Zgc:162472. (437 aa)
	LOC108233471	ELM2 and Myb/SANT-like domain containing 1a. (1063 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Dnajc2	dnajc1	ENSKMAP00000016167	ENSKMAP00000021717	DnaJ (Hsp40) homolog, subfamily C, member 2.	DnaJ (Hsp40) homolog, subfamily C, member 1.	0.408
Dnajc2	tada2a	ENSKMAP00000016167	ENSKMAP00000026333	DnaJ (Hsp40) homolog, subfamily C, member 2.	Transcriptional adapter.	0.487
Dnajc2	tada2b	ENSKMAP00000016167	ENSKMAP00000004630	DnaJ (Hsp40) homolog, subfamily C, member 2.	Transcriptional adapter.	0.487
ENSKMAP00000006990	myb	ENSKMAP00000006990	ENSKMAP00000016176	Myb-like domain-containing protein.	V-myb avian myeloblastosis viral oncogene homolog.	0.406
ENSKMAP00000023793	mysm1	ENSKMAP00000023793	ENSKMAP00000004491	Zgc:162472.	Myb-like, SWIRM and MPN domains 1.	0.579
ENSKMAP00000023793	snapc4	ENSKMAP00000023793	ENSKMAP00000007624	Zgc:162472.	Uncharacterized protein.	0.706
EZH1	smarca5	ENSKMAP00000026223	ENSKMAP00000005047	Enhancer of zeste 1 polycomb repressive complex 2 subunit.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.	0.586
LOC108233471	LOC108246840	ENSKMAP00000023541	ENSKMAP00000005631	ELM2 and Myb/SANT-like domain containing 1a.	Uncharacterized protein.	0.500
LOC108234834	LOC108235123	ENSKMAP00000005485	ENSKMAP00000018574	Uncharacterized protein.	Zgc:113263.	0.526
LOC108235123	LOC108234834	ENSKMAP00000018574	ENSKMAP00000005485	Zgc:113263.	Uncharacterized protein.	0.526
LOC108237815	smarca5	ENSKMAP00000002753	ENSKMAP00000005047	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1b.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.	0.603
LOC108237815	smarcc2	ENSKMAP00000002753	ENSKMAP00000025429	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1b.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2.	0.425
LOC108246840	LOC108233471	ENSKMAP00000005631	ENSKMAP00000023541	Uncharacterized protein.	ELM2 and Myb/SANT-like domain containing 1a.	0.500
LOC108246840	elmsan1	ENSKMAP00000005631	ENSKMAP00000017399	Uncharacterized protein.	ELM2 and Myb/SANT-like domain containing 1b.	0.500
RCOR1	chd7	ENSKMAP00000010512	ENSKMAP00000012968	REST corepressor 1.	Chromodomain helicase DNA binding protein 7.	0.415
RCOR1	chd8	ENSKMAP00000010512	ENSKMAP00000027104	REST corepressor 1.	Chromodomain-helicase-DNA-binding protein 8; DNA helicase that acts as a chromatin remodeling factor and regulates transcription. Acts as a transcription repressor by remodeling chromatin structure and recruiting histone H1 to target genes. Suppresses p53/TP53-mediated apoptosis by recruiting histone H1 and preventing p53/TP53 transactivation activity. Acts as a negative regulator of Wnt signaling pathway by regulating beta-catenin (CTNNB1) activity. Negatively regulates CTNNB1-targeted gene expression by being recruited specifically to the promoter regions of several CTNNB1 responsive [...]	0.415
RCOR1	mta1	ENSKMAP00000010512	ENSKMAP00000017565	REST corepressor 1.	Metastasis associated 1.	0.432
RCOR1	mta2	ENSKMAP00000010512	ENSKMAP00000008038	REST corepressor 1.	Metastasis associated 1 family, member 2.	0.432
RCOR1	mta3	ENSKMAP00000010512	ENSKMAP00000015500	REST corepressor 1.	Metastasis associated 1 family, member 3.	0.432
RCOR1	smarca5	ENSKMAP00000010512	ENSKMAP00000005047	REST corepressor 1.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.	0.452