STRINGSTRING
seh1l seh1l LOC108247920 LOC108247920 pabpc1 pabpc1 nup107 nup107 eif4b eif4b UPF2 UPF2 ENSKMAP00000001462 ENSKMAP00000001462 LOC108240408 LOC108240408 POP1 POP1 eif3i eif3i LOC108242722 LOC108242722 kpnb1 kpnb1 ENSKMAP00000002524 ENSKMAP00000002524 LOC108249123 LOC108249123 eif3j eif3j LOC108234217 LOC108234217 gemin5 gemin5 NCBP1 NCBP1 gemin8 gemin8 LOC108237612 LOC108237612 gle1 gle1 thoc1 thoc1 Rpp38 Rpp38 eif3a eif3a eif4a2 eif4a2 XPO5 XPO5 nxf1 nxf1 LOC108243419 LOC108243419 eif5b eif5b upf3a upf3a Rpp25l Rpp25l fxr1 fxr1 LOC108246301 LOC108246301 UPF1 UPF1 paip1 paip1 eif4e2 eif4e2 LOC108246866 LOC108246866 tacc3 tacc3 nup58 nup58 eif4g2 eif4g2 LOC108231372 LOC108231372 rae1 rae1 nup153 nup153 pym1 pym1 LOC108229566 LOC108229566 LOC108241730 LOC108241730 fmr1 fmr1 gemin6 gemin6 LOC108242297 LOC108242297 eif3d eif3d LOC108236452 LOC108236452 eif3b eif3b pnn pnn gemin2 gemin2 LOC108241327 LOC108241327 LOC108249253 LOC108249253 nup98 nup98 alyref alyref rnps1 rnps1 thoc7 thoc7 ncbp2 ncbp2 nup155 nup155 eif4a3 eif4a3 nup160 nup160 LOC108236682 LOC108236682 pop7 pop7 nup188 nup188 nup133 nup133 eif2b3 eif2b3 nup35 nup35 pop5 pop5 trnt1 trnt1 strap strap aaas aaas ran ran LOC108239641 LOC108239641 LOC108250621 LOC108250621 eif2s2 eif2s2 LOC108232577 LOC108232577 ube2i ube2i phax phax pop4 pop4 LOC108240719 LOC108240719 NUP54 NUP54 nup37 nup37 eif2b4 eif2b4 LOC108236706 LOC108236706 LOC108232646 LOC108232646 thoc5 thoc5 thoc6 thoc6 eif2b2 eif2b2 nup210 nup210 eif4g1 eif4g1 rbm8a rbm8a LOC108228363 LOC108228363 gemin4 gemin4 elac1 elac1 rangap1 rangap1 rpp30 rpp30 NUP214 NUP214 tardbp tardbp LOC108230236 LOC108230236 cyfip1 cyfip1 EEF1A1 EEF1A1 LOC108248917 LOC108248917 LOC108236207 LOC108236207 eif3g eif3g nxt2 nxt2 eif4ebp3 eif4ebp3 LOC108237984 LOC108237984 eif3f eif3f clns1a clns1a eif4g3 eif4g3 LOC108249539 LOC108249539 NUP62 NUP62 LOC108246661 LOC108246661 thoc3 thoc3 eif5 eif5 eif4ebp1 eif4ebp1 eif4ebp2 eif4ebp2 nup42 nup42 sec13 sec13 eif2s1 eif2s1 ddx20 ddx20 xpot xpot rpp40 rpp40 tgs1 tgs1 LOC108238015 LOC108238015 casc3 casc3 Elac2 Elac2 eif2b5 eif2b5 EEF1A1-2 EEF1A1-2 LOC108238627 LOC108238627 upf3b upf3b prmt5 prmt5 nmd3 nmd3 nup85 nup85 sumo2 sumo2 eif3h eif3h ndc1 ndc1 gemin7 gemin7 nup93 nup93 LOC108248713 LOC108248713 nup205 nup205 eif2b1 eif2b1 nup43 nup43
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
seh1lSEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family. (383 aa)
LOC108247920Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (500 aa)
pabpc1Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (635 aa)
nup107Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (908 aa)
eif4bEukaryotic translation initiation factor 4Bb. (638 aa)
UPF2UPF2 regulator of nonsense mediated mRNA decay. (1268 aa)
ENSKMAP00000001462Alba domain-containing protein. (152 aa)
LOC108240408RAN binding protein 2. (3043 aa)
POP1POP1 homolog, ribonuclease P/MRP subunit. (957 aa)
eif3iEukaryotic translation initiation factor 3 subunit I; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (325 aa)
LOC108242722Small ubiquitin-related modifier. (96 aa)
kpnb1Karyopherin (importin) beta 1. (876 aa)
ENSKMAP00000002524TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (434 aa)
LOC108249123Eukaryotic translation initiation factor 1B. (113 aa)
eif3jEukaryotic translation initiation factor 3 subunit J; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (266 aa)
LOC108234217Eukaryotic translation initiation factor 3 subunit E; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (445 aa)
gemin5Gem (nuclear organelle) associated protein 5. (1430 aa)
NCBP1Nuclear cap binding protein subunit 1. (795 aa)
gemin8Gem (nuclear organelle) associated protein 8. (198 aa)
LOC108237612Zgc:193690. (469 aa)
gle1GLE1 RNA export mediator. (710 aa)
thoc1THO complex 1. (653 aa)
Rpp38Ribonuclease P/MRP 38 subunit. (287 aa)
eif3aEukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (1267 aa)
eif4a2Eukaryotic translation initiation factor 4A, isoform 2; Belongs to the DEAD box helicase family. (412 aa)
XPO5Exportin 5. (903 aa)
nxf1Zgc:153681. (663 aa)
LOC108243419Ribonuclease P 21 subunit. (160 aa)
eif5bEukaryotic translation initiation factor 5B. (1203 aa)
upf3aUPF3A regulator of nonsense mediated mRNA decay. (464 aa)
Rpp25lRibonuclease P/MRP 25 subunit-like. (207 aa)
fxr1Fragile X mental retardation, autosomal homolog 1. (654 aa)
LOC108246301Exportin 1 (CRM1 homolog, yeast) a. (1069 aa)
UPF1UPF1 RNA helicase and ATPase. (1101 aa)
paip1Poly(A) binding protein interacting protein 1. (446 aa)
eif4e2Eukaryotic translation initiation factor 4E family member 2; Belongs to the eukaryotic initiation factor 4E family. (233 aa)
LOC108246866DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast). (488 aa)
tacc3Transforming, acidic coiled-coil containing protein 3. (879 aa)
nup58Nucleoporin 58. (590 aa)
eif4g2Eukaryotic translation initiation factor 4, gamma 2a. (864 aa)
LOC108231372TAR DNA binding protein. (463 aa)
rae1Ribonucleic acid export 1. (368 aa)
nup153Nucleoporin 153. (1499 aa)
pym1PYM homolog 1, exon junction complex associated factor. (221 aa)
LOC108229566RRM domain-containing protein. (239 aa)
LOC108241730Eukaryotic translation initiation factor 4eb; Belongs to the eukaryotic initiation factor 4E family. (236 aa)
fmr1Fragile X mental retardation 1. (517 aa)
gemin6Gem (nuclear organelle) associated protein 6. (181 aa)
LOC108242297Eukaryotic translation initiation factor 4A1B; Belongs to the DEAD box helicase family. (405 aa)
eif3dEukaryotic translation initiation factor 3 subunit D; mRNA cap-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. In the eIF-3 complex, eif3d specifically recognizes and binds the 7- methylguanosine cap of a subset of mRNAs. (552 aa)
LOC108236452Survival of motor neuron 1, telomeric. (282 aa)
eif3bEukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family. (676 aa)
pnnPinin, desmosome associated protein. (700 aa)
gemin2Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family. (266 aa)
LOC108241327Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (628 aa)
LOC108249253Eukaryotic translation initiation factor 3 subunit E; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (446 aa)
nup98Nucleoporin 98. (1811 aa)
alyrefAly/REF export factor. (273 aa)
rnps1RNA binding protein S1, serine-rich domain. (279 aa)
thoc7THO complex 7. (203 aa)
ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (164 aa)
nup155Nucleoporin 155. (1367 aa)
eif4a3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (423 aa)
nup160Nucleoporin 160. (1399 aa)
LOC108236682Eukaryotic translation initiation factor 4ea; Belongs to the eukaryotic initiation factor 4E family. (216 aa)
pop7Ribonuclease P protein subunit p20; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of the MRP ribonuclease complex, which cleaves pre-rRNA sequences. (151 aa)
nup188Nucleoporin 188. (1712 aa)
nup133Nucleoporin 133. (1138 aa)
eif2b3Eukaryotic translation initiation factor 2B, subunit 3 gamma. (454 aa)
nup35Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (297 aa)
pop5Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. (170 aa)
trnt1tRNA nucleotidyl transferase, CCA-adding, 1; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (426 aa)
strapSerine/threonine kinase receptor associated protein. (329 aa)
aaasAchalasia, adrenocortical insufficiency, alacrimia. (518 aa)
ranGTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family. (219 aa)
LOC108239641Uncharacterized protein. (1707 aa)
LOC108250621Eukaryotic translation initiation factor 1A X-linked b; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits. (170 aa)
eif2s2Eukaryotic translation initiation factor 2, subunit 2 beta. (334 aa)
LOC108232577Small ubiquitin-related modifier. (94 aa)
ube2iUbiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
phaxPhosphorylated adaptor for RNA export. (410 aa)
pop4Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends. (223 aa)
LOC108240719Small ubiquitin-related modifier. (94 aa)
NUP54Nucleoporin 54. (623 aa)
nup37Nucleoporin 37. (326 aa)
eif2b4Eukaryotic translation initiation factor 2B, subunit 4 delta; Belongs to the eIF-2B alpha/beta/delta subunits family. (546 aa)
LOC108236706Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (627 aa)
LOC108232646Eukaryotic translation initiation factor 4E binding protein 1. (118 aa)
thoc5THO complex 5. (684 aa)
thoc6THO complex 6. (323 aa)
eif2b2Eukaryotic translation initiation factor 2B, subunit 2 beta; Belongs to the eIF-2B alpha/beta/delta subunits family. (360 aa)
nup210Nucleoporin 210. (1882 aa)
eif4g1Uncharacterized protein. (1673 aa)
rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (175 aa)
LOC108228363Nucleoporin 50. (312 aa)
gemin4Gem (nuclear organelle) associated protein 4. (1118 aa)
elac1ElaC ribonuclease Z 1. (374 aa)
rangap1RAN GTPase activating protein 1a. (553 aa)
rpp30Ribonuclease P/MRP 30 subunit. (267 aa)
NUP214Nucleoporin 214. (1975 aa)
tardbpTAR DNA binding protein, like. (396 aa)
LOC108230236Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (457 aa)
cyfip1Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family. (1253 aa)
EEF1A1Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (462 aa)
LOC108248917Exportin 1 (CRM1 homolog, yeast) b. (1071 aa)
LOC108236207UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
eif3gEukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA. (296 aa)
nxt2Nuclear transport factor 2-like export factor 2. (150 aa)
eif4ebp3Eukaryotic translation initiation factor 4E binding protein 3. (113 aa)
LOC108237984Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family. (1252 aa)
eif3fEukaryotic translation initiation factor 3 subunit F; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (273 aa)
clns1aChloride channel, nucleotide-sensitive, 1A. (246 aa)
eif4g3Eukaryotic translation initiation factor 4 gamma, 3a. (1839 aa)
LOC108249539Eukaryotic translation initiation factor 2, subunit 3 gamma. (472 aa)
NUP62Nucleoporin 62. (552 aa)
LOC108246661Mago homolog, exon junction complex subunit. (147 aa)
thoc3THO complex 3. (322 aa)
eif5Eukaryotic translation initiation factor 5. (435 aa)
eif4ebp1Uncharacterized protein. (119 aa)
eif4ebp2Eukaryotic translation initiation factor 4E binding protein 2. (114 aa)
nup42Nucleoporin 42. (436 aa)
sec13SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family. (320 aa)
eif2s1Eukaryotic translation initiation factor 2, subunit 1 alpha b. (315 aa)
ddx20DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family. (771 aa)
xpotExportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family. (923 aa)
rpp40Ribonuclease P/MRP 40 subunit. (349 aa)
tgs1Uncharacterized protein. (801 aa)
LOC108238015POM121 transmembrane nucleoporin. (1163 aa)
casc3Casc3 exon junction complex subunit. (741 aa)
Elac2Lactamase_B_4 domain-containing protein. (178 aa)
eif2b5Eukaryotic translation initiation factor 2B, subunit 5 epsilon. (709 aa)
EEF1A1-2Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (462 aa)
LOC108238627SAP domain-containing protein. (1713 aa)
upf3bUPF3B regulator of nonsense mediated mRNA decay. (456 aa)
prmt5Protein arginine N-methyltransferase 5; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA); Belongs to the class I-like SAM-binding methyltransferase superfamily. (631 aa)
nmd360S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (551 aa)
nup85Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (651 aa)
sumo2Small ubiquitin-related modifier. (95 aa)
eif3hEukaryotic translation initiation factor 3 subunit H; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (341 aa)
ndc1NDC1 transmembrane nucleoporin. (669 aa)
gemin7Gem (nuclear organelle) associated protein 7. (128 aa)
nup93Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (821 aa)
LOC108248713Eukaryotic translation initiation factor 3 subunit C; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (938 aa)
nup205Nucleoporin 205. (1960 aa)
eif2b1Eukaryotic translation initiation factor 2B, subunit 1 alpha; Belongs to the eIF-2B alpha/beta/delta subunits family. (328 aa)
nup43Nucleoporin 43. (371 aa)
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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