STRINGSTRING
smg6 smg6 pabpc1 pabpc1 LOC108241547 LOC108241547 cstf2 cstf2 PABPN1L PABPN1L UPF2 UPF2 ENSKMAP00000001637 ENSKMAP00000001637 pcf11 pcf11 rnmt rnmt ENSKMAP00000002524 ENSKMAP00000002524 ppp2r3a ppp2r3a LOC108249674 LOC108249674 CPSF7 CPSF7 NCBP1 NCBP1 LOC108237612 LOC108237612 LOC108239401 LOC108239401 gle1 gle1 LOC108236503 LOC108236503 nxf1 nxf1 upf3a upf3a PPP2R3B PPP2R3B UPF1 UPF1 LOC108246866 LOC108246866 wdr82 wdr82 dazap1 dazap1 LOC108240607 LOC108240607 LOC108231372 LOC108231372 LOC108246886 LOC108246886 pym1 pym1 LOC108229566 LOC108229566 ppp2r5b ppp2r5b ppp1cc ppp1cc CPSF3 CPSF3 pnn pnn LOC108241327 LOC108241327 smg1 smg1 ppp2r3c ppp2r3c nudt21 nudt21 alyref alyref LOC108237801 LOC108237801 LOC108245816 LOC108245816 rnps1 rnps1 ppp2r5c ppp2r5c LOC108243526 LOC108243526 etf1 etf1 msi2 msi2 ncbp2 ncbp2 eif4a3 eif4a3 cstf3 cstf3 ppp2cb ppp2cb LOC108234994 LOC108234994 LOC108237541 LOC108237541 clp1 clp1 hbs1l hbs1l PPP2R2C PPP2R2C LOC108236706 LOC108236706 rbm8a rbm8a smg5 smg5 cpsf6 cpsf6 tardbp tardbp LOC108241377 LOC108241377 sympk sympk papolg papolg nxt2 nxt2 cstf1 cstf1 LOC108246661 LOC108246661 ppp2r5a ppp2r5a pabpn1 pabpn1 LOC108231864 LOC108231864 cpsf2 cpsf2 casc3 casc3 rngtt rngtt ppp2ca ppp2ca PPP1CB PPP1CB ppp2r2d ppp2r2d LOC108238627 LOC108238627 upf3b upf3b pelo pelo LOC108247904 LOC108247904 ssu72 ssu72 GSPT1 GSPT1 LOC108241575 LOC108241575
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
smg6SMG6 nonsense mediated mRNA decay factor. (1636 aa)
pabpc1Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (635 aa)
LOC108241547Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (448 aa)
cstf2Cleavage stimulation factor, 3' pre-RNA, subunit 2. (491 aa)
PABPN1LPoly(A) binding protein nuclear 1 like, cytoplasmic. (226 aa)
UPF2UPF2 regulator of nonsense mediated mRNA decay. (1268 aa)
ENSKMAP00000001637WD repeat domain 33. (267 aa)
pcf11PCF11 cleavage and polyadenylation factor subunit. (1568 aa)
rnmtmRNA cap guanine-N7 methyltransferase. (382 aa)
ENSKMAP00000002524TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (434 aa)
ppp2r3aProtein phosphatase 2, regulatory subunit B'', alpha. (1398 aa)
LOC108249674Cleavage and polyadenylation specific factor 3. (686 aa)
CPSF7Cleavage and polyadenylation specific factor 7. (471 aa)
NCBP1Nuclear cap binding protein subunit 1. (795 aa)
LOC108237612Zgc:193690. (469 aa)
LOC108239401Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (327 aa)
gle1GLE1 RNA export mediator. (710 aa)
LOC108236503Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (448 aa)
nxf1Zgc:153681. (663 aa)
upf3aUPF3A regulator of nonsense mediated mRNA decay. (464 aa)
PPP2R3BProtein phosphatase 2 regulatory subunit B''beta. (581 aa)
UPF1UPF1 RNA helicase and ATPase. (1101 aa)
LOC108246866DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast). (488 aa)
wdr82WD repeat domain 82. (415 aa)
dazap1DAZ associated protein 1. (440 aa)
LOC108240607Serine/threonine-protein phosphatase. (309 aa)
LOC108231372TAR DNA binding protein. (463 aa)
LOC108246886Tr-type G domain-containing protein. (577 aa)
pym1PYM homolog 1, exon junction complex associated factor. (221 aa)
LOC108229566RRM domain-containing protein. (239 aa)
ppp2r5bSerine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (519 aa)
ppp1ccSerine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (323 aa)
CPSF3Cleavage and polyadenylation specific factor 3. (690 aa)
pnnPinin, desmosome associated protein. (700 aa)
LOC108241327Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (628 aa)
smg1SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family. (2520 aa)
ppp2r3cProtein phosphatase 2, regulatory subunit B'', gamma. (459 aa)
nudt21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (231 aa)
alyrefAly/REF export factor. (273 aa)
LOC108237801Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (332 aa)
LOC108245816Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (446 aa)
rnps1RNA binding protein S1, serine-rich domain. (279 aa)
ppp2r5cSerine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (525 aa)
LOC108243526Protein phosphatase 2, regulatory subunit A, beta b. (589 aa)
etf1Eukaryotic translation termination factor 1b. (443 aa)
msi2Musashi RNA-binding protein 2a. (388 aa)
ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (164 aa)
eif4a3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (423 aa)
cstf3Cleavage stimulation factor, 3' pre-RNA, subunit 3. (716 aa)
ppp2cbSerine/threonine-protein phosphatase. (309 aa)
LOC108234994Musashi RNA binding protein 1. (347 aa)
LOC108237541Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (327 aa)
clp1Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...] (441 aa)
hbs1lHBS1-like translational GTPase. (699 aa)
PPP2R2CSerine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (453 aa)
LOC108236706Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (627 aa)
rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (175 aa)
smg5SMG5 nonsense mediated mRNA decay factor. (1124 aa)
cpsf6Cleavage and polyadenylation specific factor 6. (582 aa)
tardbpTAR DNA binding protein, like. (396 aa)
LOC108241377Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (445 aa)
sympkSymplekin. (1221 aa)
papolgPoly(A) polymerase gamma. (835 aa)
nxt2Nuclear transport factor 2-like export factor 2. (150 aa)
cstf1Cleavage stimulation factor, 3' pre-RNA, subunit 1. (431 aa)
LOC108246661Mago homolog, exon junction complex subunit. (147 aa)
ppp2r5aSerine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (509 aa)
pabpn1Poly(A) binding protein, nuclear 1. (285 aa)
LOC108231864Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (576 aa)
cpsf2Cleavage and polyadenylation specificity factor subunit 2. (787 aa)
casc3Casc3 exon junction complex subunit. (741 aa)
rngttPolynucleotide 5'-triphosphatase; Bifunctional mRNA-capping enzyme exhibiting RNA 5'- triphosphatase activity in the N-terminal part and mRNA guanylyltransferase activity in the C-terminal part. Catalyzes the first two steps of cap formation: by removing the gamma-phosphate from the 5'-triphosphate end of nascent mRNA to yield a diphosphate end, and by transferring the gmp moiety of GTP to the 5'-diphosphate terminus. (601 aa)
ppp2caSerine/threonine-protein phosphatase. (309 aa)
PPP1CBSerine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (327 aa)
ppp2r2dSerine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (447 aa)
LOC108238627SAP domain-containing protein. (1713 aa)
upf3bUPF3B regulator of nonsense mediated mRNA decay. (456 aa)
peloProtein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (385 aa)
LOC108247904Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (325 aa)
ssu72SSU72 homolog, RNA polymerase II CTD phosphatase. (194 aa)
GSPT1G1 to S phase transition 1. (588 aa)
LOC108241575FIP1 like 1b (S. cerevisiae). (541 aa)
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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