36 items (Kryptolebias marmoratus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

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protein homology

Your Input:
	gtf2e2	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (287 aa)
	gtf2f1	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (530 aa)
	LOC108240442	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (261 aa)
	taf7l	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (362 aa)
	gtf2h4	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (463 aa)
	taf8	TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (306 aa)
	gtf2a1	General transcription factor IIA, 1. (385 aa)
	taf3	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto. (982 aa)
	ccnh	Cyclin H; Belongs to the cyclin family. (333 aa)
	LOC112450151	Uncharacterized protein. (205 aa)
	taf6l	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor. (639 aa)
	mnat1	CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (311 aa)
	LOC108251031	TAFH domain-containing protein. (933 aa)
	taf6	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (638 aa)
	gtf2h5	General transcription factor IIH, polypeptide 5. (71 aa)
	taf11	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (204 aa)
	taf5l	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor. (600 aa)
	gtf2a2	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (109 aa)
	tbpl1	TBP-like 1. (189 aa)
	taf12	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (160 aa)
	taf10	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family. (188 aa)
	cdk7	Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (343 aa)
	gtf2ird1	GTF2I repeat domain containing 1. (1018 aa)
	LOC108228304	TATA box binding protein like 2. (310 aa)
	LOC108250675	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (274 aa)
	gtf2e1	General transcription factor IIE, polypeptide 1, alpha. (446 aa)
	gtf2a1l	General transcription factor IIA, 1-like. (427 aa)
	gtf2h3	General transcription factor IIH, polypeptide 3. (299 aa)
	taf2	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (1215 aa)
	tbp	TATA box binding protein. (304 aa)
	gtf2h1	General transcription factor IIH, polypeptide 1. (409 aa)
	taf5	TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (749 aa)
	ercc2	Excision repair cross-complementation group 2. (760 aa)
	gtf2f2	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (268 aa)
	ercc3	Excision repair cross-complementation group 3. (783 aa)
	LOC108232507	General transcription factor IIH subunit. (392 aa)

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108228304	LOC108232507	ENSKMAP00000017917	ENSKMAP00000029528	TATA box binding protein like 2.	General transcription factor IIH subunit.	0.892
LOC108228304	LOC108240442	ENSKMAP00000017917	ENSKMAP00000001506	TATA box binding protein like 2.	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	0.848
LOC108228304	LOC108250675	ENSKMAP00000017917	ENSKMAP00000018130	TATA box binding protein like 2.	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.941
LOC108228304	LOC108251031	ENSKMAP00000017917	ENSKMAP00000009198	TATA box binding protein like 2.	TAFH domain-containing protein.	0.793
LOC108228304	ccnh	ENSKMAP00000017917	ENSKMAP00000006920	TATA box binding protein like 2.	Cyclin H; Belongs to the cyclin family.	0.827
LOC108228304	cdk7	ENSKMAP00000017917	ENSKMAP00000017456	TATA box binding protein like 2.	Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily.	0.697
LOC108228304	ercc2	ENSKMAP00000017917	ENSKMAP00000028774	TATA box binding protein like 2.	Excision repair cross-complementation group 2.	0.906
LOC108228304	ercc3	ENSKMAP00000017917	ENSKMAP00000029380	TATA box binding protein like 2.	Excision repair cross-complementation group 3.	0.923
LOC108228304	gtf2a1	ENSKMAP00000017917	ENSKMAP00000004680	TATA box binding protein like 2.	General transcription factor IIA, 1.	0.891
LOC108228304	gtf2a1l	ENSKMAP00000017917	ENSKMAP00000022412	TATA box binding protein like 2.	General transcription factor IIA, 1-like.	0.864
LOC108228304	gtf2a2	ENSKMAP00000017917	ENSKMAP00000014646	TATA box binding protein like 2.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.938
LOC108228304	gtf2e1	ENSKMAP00000017917	ENSKMAP00000020856	TATA box binding protein like 2.	General transcription factor IIE, polypeptide 1, alpha.	0.947
LOC108228304	gtf2e2	ENSKMAP00000017917	ENSKMAP00000000406	TATA box binding protein like 2.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.912
LOC108228304	gtf2f1	ENSKMAP00000017917	ENSKMAP00000001405	TATA box binding protein like 2.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.919
LOC108228304	gtf2f2	ENSKMAP00000017917	ENSKMAP00000029353	TATA box binding protein like 2.	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	0.848
LOC108228304	gtf2h1	ENSKMAP00000017917	ENSKMAP00000028496	TATA box binding protein like 2.	General transcription factor IIH, polypeptide 1.	0.851
LOC108228304	gtf2h3	ENSKMAP00000017917	ENSKMAP00000026350	TATA box binding protein like 2.	General transcription factor IIH, polypeptide 3.	0.923
LOC108228304	gtf2h4	ENSKMAP00000017917	ENSKMAP00000001923	TATA box binding protein like 2.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.916
LOC108228304	gtf2h5	ENSKMAP00000017917	ENSKMAP00000011911	TATA box binding protein like 2.	General transcription factor IIH, polypeptide 5.	0.735
LOC108228304	mnat1	ENSKMAP00000017917	ENSKMAP00000007944	TATA box binding protein like 2.	CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex.	0.911