(12 nodes) Mixed, incl. Ribosomal protein L37ae/L37e, and Ribosomal protein L14 network (Arabidopsis thaliana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPL18A	Putative 60S ribosomal protein L18-1; Belongs to the eukaryotic ribosomal protein eL18 family. (188 aa)
	ARP2	60S ribosomal protein L3-2. (390 aa)
	F19P19.16	BTB/POZ domain-containing protein At1g04390; May act as a substrate-specific adapter of an E3 ubiquitin- protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. (1002 aa)
	RPL34A	60S ribosomal protein L34-1. (120 aa)
	RPL37B	60S ribosomal protein L37-2; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family. (95 aa)
	Dl4055W	Ribosomal protein L19e family protein. (114 aa)
	RPL37A	60S ribosomal protein L37-1; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family. (95 aa)
	RPL37AC	60S ribosomal protein L37a-2; Belongs to the eukaryotic ribosomal protein eL43 family. (92 aa)
	RPL35AA	60S ribosomal protein L35a-1; Belongs to the eukaryotic ribosomal protein eL33 family. (112 aa)
	F28H19.11	Sequence-specific DNA binding transcription factor. (370 aa)
	RPL7A	60S ribosomal protein L7-1; Belongs to the universal ribosomal protein uL30 family. (247 aa)
	RPL14A	60S ribosomal protein L14-1; Belongs to the eukaryotic ribosomal protein eL14 family. (134 aa)

Your Current Organism:

Arabidopsis thaliana

NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARP2	Dl4055W	P22738	Q680Q9	60S ribosomal protein L3-2.	Ribosomal protein L19e family protein.	0.995
ARP2	F19P19.16	P22738	P93820	60S ribosomal protein L3-2.	BTB/POZ domain-containing protein At1g04390; May act as a substrate-specific adapter of an E3 ubiquitin- protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	0.962
ARP2	F28H19.11	P22738	Q9MAR2	60S ribosomal protein L3-2.	Sequence-specific DNA binding transcription factor.	0.994
ARP2	RPL14A	P22738	Q9SIM4	60S ribosomal protein L3-2.	60S ribosomal protein L14-1; Belongs to the eukaryotic ribosomal protein eL14 family.	0.952
ARP2	RPL18A	P22738	O22254	60S ribosomal protein L3-2.	Putative 60S ribosomal protein L18-1; Belongs to the eukaryotic ribosomal protein eL18 family.	0.971
ARP2	RPL34A	P22738	Q42351	60S ribosomal protein L3-2.	60S ribosomal protein L34-1.	0.960
ARP2	RPL35AA	P22738	Q9LMK0	60S ribosomal protein L3-2.	60S ribosomal protein L35a-1; Belongs to the eukaryotic ribosomal protein eL33 family.	0.965
ARP2	RPL37A	P22738	Q8LFH7	60S ribosomal protein L3-2.	60S ribosomal protein L37-1; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family.	0.934
ARP2	RPL37AC	P22738	Q8RXU5	60S ribosomal protein L3-2.	60S ribosomal protein L37a-2; Belongs to the eukaryotic ribosomal protein eL43 family.	0.994
ARP2	RPL37B	P22738	Q43292	60S ribosomal protein L3-2.	60S ribosomal protein L37-2; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family.	0.936
ARP2	RPL7A	P22738	Q9SAI5	60S ribosomal protein L3-2.	60S ribosomal protein L7-1; Belongs to the universal ribosomal protein uL30 family.	0.955
Dl4055W	ARP2	Q680Q9	P22738	Ribosomal protein L19e family protein.	60S ribosomal protein L3-2.	0.995
Dl4055W	F19P19.16	Q680Q9	P93820	Ribosomal protein L19e family protein.	BTB/POZ domain-containing protein At1g04390; May act as a substrate-specific adapter of an E3 ubiquitin- protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	0.947
Dl4055W	F28H19.11	Q680Q9	Q9MAR2	Ribosomal protein L19e family protein.	Sequence-specific DNA binding transcription factor.	0.992
Dl4055W	RPL14A	Q680Q9	Q9SIM4	Ribosomal protein L19e family protein.	60S ribosomal protein L14-1; Belongs to the eukaryotic ribosomal protein eL14 family.	0.905
Dl4055W	RPL18A	Q680Q9	O22254	Ribosomal protein L19e family protein.	Putative 60S ribosomal protein L18-1; Belongs to the eukaryotic ribosomal protein eL18 family.	0.950
Dl4055W	RPL34A	Q680Q9	Q42351	Ribosomal protein L19e family protein.	60S ribosomal protein L34-1.	0.955
Dl4055W	RPL35AA	Q680Q9	Q9LMK0	Ribosomal protein L19e family protein.	60S ribosomal protein L35a-1; Belongs to the eukaryotic ribosomal protein eL33 family.	0.938
Dl4055W	RPL37A	Q680Q9	Q8LFH7	Ribosomal protein L19e family protein.	60S ribosomal protein L37-1; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family.	0.943
Dl4055W	RPL37AC	Q680Q9	Q8RXU5	Ribosomal protein L19e family protein.	60S ribosomal protein L37a-2; Belongs to the eukaryotic ribosomal protein eL43 family.	0.961