STRINGSTRING
A0A1P8AZD4 A0A1P8AZD4 T22P22.140 T22P22.140 rps7 rps7 rpl2 rpl2 rps12 rps12 F4J9E4_ARATH F4J9E4_ARATH F4JEK7_ARATH F4JEK7_ARATH F4JJ97_ARATH F4JJ97_ARATH F20P5.9 F20P5.9 RPL5 RPL5 RPL28 RPL28 RPL6 RPL6 C7A10.940 C7A10.940 F3I6.17 F3I6.17 RPL4 RPL4 RPS16-1 RPS16-1 RPL35B RPL35B RPL9 RPL9 RPL15 RPL15 RPL12A RPL12A RPL12B RPL12B RPL12C RPL12C RPS19 RPS19 RPS13 RPS13 rpoB rpoB RPL21 RPL21 rpoA rpoA rpoC1 rpoC1 rpoC2 rpoC2 cemA cemA matK matK ycf4 ycf4 rpl2-A rpl2-A rpl14 rpl14 rpl16 rpl16 rpl20 rpl20 rpl22 rpl22 rpl33 rpl33 rps3 rps3 rps8 rps8 rps14 rps14 rps16 rps16 rps18 rps18 rps19 rps19 rps7-A rps7-A ycf3 ycf3 rpl23-A rpl23-A rpl32 rpl32 psbN psbN rpl36 rpl36 rps12-A rps12-A RPS12 RPS12 RPS7 RPS7 RPL24 RPL24 RPL2 RPL2 MUB3.17 MUB3.17 F18O22.80 F18O22.80 F19K6.5 F19K6.5 F13O11.18 F13O11.18 F28J7.12 F28J7.12 Fes1A Fes1A Q84JF2_ARATH Q84JF2_ARATH HLL HLL K23L20.5 K23L20.5 Q8GXP7_ARATH Q8GXP7_ARATH MKM21.12 MKM21.12 RPS9M RPS9M DECOY DECOY RPL21M RPL21M F19K19.15 F19K19.15 F17I14.40 F17I14.40 F20O9.30 F20O9.30 F14N22.3 F14N22.3 MQL5.4 MQL5.4 TIG TIG T2G17.14 T2G17.14 Q8VZU4_ARATH Q8VZU4_ARATH dl4815w dl4815w F5O24.70 F5O24.70 F6I1.13 F6I1.13 RPS1 RPS1 HLP HLP Q945Q5_ARATH Q945Q5_ARATH F8M21.110 F8M21.110 F24B9.7 F24B9.7 T31K7.7 T31K7.7 RPL16 RPL16 MEFG1 MEFG1 RPS13-2 RPS13-2 MUD21.12 MUD21.12 MUB3.19 MUB3.19 RPL27 RPL27 RPL31 RPL31 RPL10 RPL10 RPS2-2 RPS2-2 T2E22.37 T2E22.37 Q9LJQ6_ARATH Q9LJQ6_ARATH RPS10-2 RPS10-2 F10K1.8 F10K1.8 F7H2.15 F7H2.15 RPL3B RPL3B Q9LSA1_ARATH Q9LSA1_ARATH RPS16-2 RPS16-2 MUD12.5 MUD12.5 MNB8.13 MNB8.13 RPL1 RPL1 F26K9_240 F26K9_240 RPS15AE RPS15AE F5K20_100 F5K20_100 RPL17 RPL17 T21F11.5 T21F11.5 RPL11 RPL11 F28J7.7 F28J7.7 RPL3A RPL3A T5J17.50 T5J17.50 rps14-2 rps14-2 F17K4.40 F17K4.40 F4F15.90 F4F15.90 RPL13AC RPL13AC MRPL11 MRPL11 RPL13 RPL13 PETs PETs T5C23.60 T5C23.60 emb1129 emb1129 RPS9 RPS9 CEN CEN T30D6.9 T30D6.9 TUFA-2 TUFA-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A0A1P8AZD4Uncharacterized protein. (171 aa)
T22P22.140Ribosomal protein L19 family protein. (253 aa)
rps7Ribosomal protein S7. (148 aa)
rpl2Ribosomal protein L2. (349 aa)
rps12Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family. (125 aa)
F4J9E4_ARATHMitochondrial ribosomal protein L51/S25/CI-B8 family protein. (146 aa)
F4JEK7_ARATHRibosomal protein L34. (201 aa)
F4JJ97_ARATHMitochondrial ribosomal protein L27. (124 aa)
F20P5.9Ribosomal protein L7/L12 domain-containing protein. (208 aa)
RPL550S ribosomal protein L5, chloroplastic; Binds 5S rRNA, forms part of the central protuberance of the 50S subunit. (262 aa)
RPL2850S ribosomal protein L28, chloroplastic. (143 aa)
RPL650S ribosomal protein L6, chloroplastic; This protein binds directly to 23S ribosomal RNA and is located at the aminoacyl-tRNA binding site of the peptidyltransferase center. (223 aa)
C7A10.940Ribosomal protein L12 family protein. (179 aa)
F3I6.17Ribosomal protein L19 family protein. (222 aa)
RPL450S ribosomal protein L4, chloroplastic; This protein binds directly and specifically to 23S rRNA (By similarity). May play a role in plastid transcriptional regulation. Belongs to the universal ribosomal protein uL4 family. (282 aa)
RPS16-130S ribosomal protein S16-1, chloroplastic. (113 aa)
RPL35B60S ribosomal protein L35-2; Belongs to the universal ribosomal protein uL29 family. (123 aa)
RPL950S ribosomal protein L9, chloroplastic; Binds to the 23S rRNA. (197 aa)
RPL1550S ribosomal protein L15, chloroplastic; Belongs to the universal ribosomal protein uL15 family. (277 aa)
RPL12A50S ribosomal protein L12-1, chloroplastic. (191 aa)
RPL12B50S ribosomal protein L12-2, chloroplastic. (193 aa)
RPL12C50S ribosomal protein L12-3, chloroplastic. (187 aa)
RPS1940S ribosomal protein S19, mitochondrial; The RNA-binding domain found in RPS19 may functionally replaces the missing mitochondrial RPS13; Belongs to the universal ribosomal protein uS19 family. (212 aa)
RPS1330S ribosomal protein S13, chloroplastic; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; Belongs to the universal ribosomal protein uS13 family. (169 aa)
rpoBDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1072 aa)
RPL2150S ribosomal protein L21, chloroplastic; This protein binds to 23S ribosomal RNA in the presence of protein L20. (220 aa)
rpoADNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (329 aa)
rpoC1DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the RNA polymerase beta' chain family. RpoC1 subfamily. (680 aa)
rpoC2DNA-directed RNA polymerase subunit beta'; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1376 aa)
cemAChloroplast envelope membrane protein; May be involved in proton extrusion. Indirectly promotes efficient inorganic carbon uptake into chloroplasts. Belongs to the Cema family. (229 aa)
matKMaturase K; Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns. Belongs to the intron maturase 2 family. MatK subfamily. (504 aa)
ycf4Photosystem I assembly protein Ycf4; Seems to be required for the assembly of the photosystem I complex; Belongs to the Ycf4 family. (184 aa)
rpl2-A50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family. (274 aa)
rpl1450S ribosomal protein L14, chloroplastic; Binds to 23S rRNA. (122 aa)
rpl1650S ribosomal protein L16, chloroplastic; Belongs to the universal ribosomal protein uL16 family. (135 aa)
rpl2050S ribosomal protein L20, chloroplastic; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (By similarity). (117 aa)
rpl2250S ribosomal protein L22, chloroplastic; This protein binds specifically to 23S rRNA; Belongs to the universal ribosomal protein uL22 family. (160 aa)
rpl3350S ribosomal protein L33, chloroplastic. (66 aa)
rps330S ribosomal protein S3, chloroplastic; Belongs to the universal ribosomal protein uS3 family. (218 aa)
rps830S ribosomal protein S8, chloroplastic; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit. (134 aa)
rps1430S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles. Belongs to the universal ribosomal protein uS14 family. (100 aa)
rps1630S ribosomal protein S16, chloroplastic. (79 aa)
rps1830S ribosomal protein S18, chloroplastic; Belongs to the bacterial ribosomal protein bS18 family. (101 aa)
rps1930S ribosomal protein S19, chloroplastic; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (92 aa)
rps7-A30S ribosomal protein S7, chloroplastic; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. (155 aa)
ycf3Photosystem I assembly protein Ycf3; Essential for the assembly of the photosystem I (PSI) complex. May act as a chaperone-like factor to guide the assembly of the PSI subunits. (168 aa)
rpl23-A50S ribosomal protein L23, chloroplastic; Binds to 23S rRNA. (93 aa)
rpl3250S ribosomal protein L32, chloroplastic. (52 aa)
psbNProtein PsbN; May play a role in photosystem I and II biogenesis. Belongs to the PsbN family. (43 aa)
rpl3650S ribosomal protein L36, chloroplastic. (37 aa)
rps12-A30S ribosomal protein S12, chloroplastic; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits (By similarity). (123 aa)
RPS12Ribosomal protein S12, mitochondrial; Protein S12 is involved in the translation initiation step; Belongs to the universal ribosomal protein uS12 family. (125 aa)
RPS7Ribosomal protein S7, mitochondrial; One of the primary rRNA binding proteins, it binds directly to 18S rRNA where it nucleates assembly of the head domain of the small subunit; Belongs to the universal ribosomal protein uS7 family. (148 aa)
RPL2450S ribosomal protein L24, chloroplastic; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (By similarity). Required for optimal plastid performance in terms of photosynthesis and growth. Required for the translation of plastid mRNAs. Plays a critical role in biosynthesis of thylakoid membrane proteins encoded by chloroplast genes. (198 aa)
RPL260S ribosomal protein L2, mitochondrial; Belongs to the universal ribosomal protein uL2 family. (349 aa)
MUB3.17Ribosomal protein L17 family protein; Belongs to the bacterial ribosomal protein bL17 family. (160 aa)
F18O22.80Mitochondrial ribosomal protein L37. (132 aa)
F19K6.5Putative chloroplast 50S ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family. (269 aa)
F13O11.18Ribosomal protein S5 family protein; Belongs to the universal ribosomal protein uS5 family. (515 aa)
F28J7.12Ribosomal protein L13 family protein. (205 aa)
Fes1AFes1A. (363 aa)
Q84JF2_ARATHClass I peptide chain release factor. (236 aa)
HLL50S ribosomal protein HLL, mitochondrial; Binds to 23S rRNA in mitochondrion (By similarity). Required for the formation of the proximal region of the ovule primordium during floral organogenesis, thus participating in patterning and growth of ovule. Also regulates the initiation and/or maintenance of integument and embryo sac ontogenesis. Prevents inappropriate cell death in the young ovule; Belongs to the universal ribosomal protein uL14 family. (196 aa)
K23L20.537S ribosomal protein S27. (102 aa)
Q8GXP7_ARATHMitochondrial inner membrane translocase complex, subunit Tim44-related protein. (313 aa)
MKM21.12Mitochondrial ribosomal protein L27. (94 aa)
RPS9M30S ribosomal protein S9, mitochondrial; Mitochondrial ribosomal protein required for central cell maturation. May work together with PIA2 in controlling female gametophyte development, possibly by regulating the expression of some mitochondrial proteins. (430 aa)
DECOYAt1g14620/T5E21_15. (233 aa)
RPL21M50S ribosomal protein L21, mitochondrial; This protein binds to 23S ribosomal RNA in the presence of protein L20 (By similarity). Required for karyogamy during female gametophyte development, when the two polar nuclei fuse to form the diploid central cell nucleus, and during double fertilization of the egg cell and the central cell. (270 aa)
F19K19.1550S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (126 aa)
F17I14.40Ribosomal protein L17 family protein; Belongs to the bacterial ribosomal protein bL17 family. (160 aa)
F20O9.30Ribosomal protein L22p/L17e family protein; Belongs to the universal ribosomal protein uL22 family. (271 aa)
F14N22.3Ribosomal protein L1p/L10e family. (415 aa)
MQL5.450S ribosomal protein L19-2, chloroplastic; Located at the 30S-50S ribosomal subunit interface and binds directly to 23S ribosomal RNA. (229 aa)
TIGTrigger factor-like protein TIG, Chloroplastic; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase (By similarity). Belongs to the FKBP-type PPIase family. Tig subfamily. (547 aa)
T2G17.14Ribosomal protein L4/L1 family. (300 aa)
Q8VZU4_ARATHRibosomal protein L2 family. (214 aa)
dl4815w50S ribosomal protein L19-1, chloroplastic; Located at the 30S-50S ribosomal subunit interface and binds directly to 23S ribosomal RNA. (225 aa)
F5O24.70Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (103 aa)
F6I1.13Mitochondrial 28S ribosomal protein S29-like protein. (480 aa)
RPS130S ribosomal protein S1, chloroplastic; Required for optimal plastid performance in terms of photosynthesis and growth. Required for the translation of plastid mRNAs. Involved in cellular heat stress response and required for heat tolerance. Required for transcriptional activation of HSFA2 and its target genes in response to heat stress. Plays a critical role in biosynthesis of thylakoid membrane proteins encoded by chloroplast genes. (416 aa)
HLP50S ribosomal protein HLP, mitochondrial; Binds to 23S rRNA in mitochondrion. (173 aa)
Q945Q5_ARATHBacterial trigger factor. (199 aa)
F8M21.110Ribosomal protein L27 family protein. (154 aa)
F24B9.7Ribosomal protein L29 family protein. (144 aa)
T31K7.730S ribosomal protein. (308 aa)
RPL1660S ribosomal protein L16, mitochondrial; Belongs to the universal ribosomal protein uL16 family. (179 aa)
MEFG1Elongation factor G-1, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation fa [...] (754 aa)
RPS13-2Small ribosomal subunit protein S13, mitochondrial; Located at the top of the head of the small subunit, it contacts several helices of the 18S rRNA. (154 aa)
MUD21.12Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein. (249 aa)
MUB3.19Ribosomal protein L18e/L15 superfamily protein. (281 aa)
RPL2750S ribosomal protein L27, chloroplastic. (198 aa)
RPL3150S ribosomal protein L31, chloroplastic; Binds the 23S rRNA. (144 aa)
RPL1050S ribosomal protein L10, chloroplastic; This protein binds directly to 23S ribosomal RNA. (220 aa)
RPS2-2Ribosomal protein S2, mitochondrial. (219 aa)
T2E22.3750S ribosomal protein L10, putative; 89815-90330. (171 aa)
Q9LJQ6_ARATHRibosomal protein S24/S35. (419 aa)
RPS10-230S ribosomal protein S10, chloroplastic; Belongs to the universal ribosomal protein uS10 family. (191 aa)
F10K1.8Ribosomal protein S18; Belongs to the bacterial ribosomal protein bS18 family. (261 aa)
F7H2.15S15/NS1, RNA-binding protein. (419 aa)
RPL3B50S ribosomal protein L3-2, mitochondrial; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. (324 aa)
Q9LSA1_ARATHTranslation elongation factor EF1B/ribosomal protein S6 family protein. (139 aa)
RPS16-230S ribosomal protein S16-2, chloroplastic/mitochondrial; Belongs to the bacterial ribosomal protein bS16 family. (135 aa)
MUD12.5Mitochondrial ribosomal protein L27. (94 aa)
MNB8.13Similarity to ribosomal protein L9. (221 aa)
RPL150S ribosomal protein L1, chloroplastic; This protein binds directly to 23S ribosomal RNA. Belongs to the universal ribosomal protein uL1 family. (346 aa)
F26K9_240Complex 1 family protein / LVR family protein; Belongs to the complex I LYR family. (106 aa)
RPS15AE40S ribosomal protein S15a-5; Belongs to the universal ribosomal protein uS8 family. (129 aa)
F5K20_100Fes1B. (363 aa)
RPL1750S ribosomal protein L17, chloroplastic; This protein binds directly to 23S ribosomal RNA. (211 aa)
T21F11.5S15/NS1, RNA-binding protein. (414 aa)
RPL1150S ribosomal protein L11, chloroplastic; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (222 aa)
F28J7.7Mitochondrial ribosomal protein L37. (126 aa)
RPL3A50S ribosomal protein L3-1, chloroplastic; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. (271 aa)
T5J17.50Ribosomal protein L23/L15e family protein. (178 aa)
rps14-2Mitochondrial ribosomal protein S14. (164 aa)
F17K4.40Ribosomal protein L33 family protein. (58 aa)
F4F15.90ARM repeat superfamily protein. (382 aa)
RPL13AC60S ribosomal protein L13a-3; Belongs to the universal ribosomal protein uL13 family. (206 aa)
MRPL11Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family. (155 aa)
RPL1350S ribosomal protein L13, chloroplastic; Belongs to the universal ribosomal protein uL13 family. (241 aa)
PETsPlastid-specific ribosomal protein-7, chloroplastic; [Elongation factor Ts, chloroplastic]: Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP (By similarity). It remains bound to the aminoacyl-tRNA.EF-Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (By similarity). (953 aa)
T5C23.60Ribosomal protein L19 family protein. (225 aa)
emb1129Nucleic acid-binding, OB-fold-like protein. (116 aa)
RPS930S ribosomal protein S9, chloroplastic; Binds directly to 16S ribosomal RNA; Belongs to the universal ribosomal protein uS9 family. (208 aa)
CENProtein CENTRORADIALIS-like; May form complexes with phosphorylated ligands by interfering with kinases and their effectors (By similarity). Can substitute for TERMINAL FLOWER 1 (in vitro); Belongs to the phosphatidylethanolamine-binding protein family. (175 aa)
T30D6.9Ribosomal protein L6 family protein; Belongs to the universal ribosomal protein uL6 family. (102 aa)
TUFA-2Elongation factor Tu, mitochondrial; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily. (454 aa)
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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