6 items (Arabidopsis thaliana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SYT5	Synaptotagmin-5; May be involved in membrane trafficking. (560 aa)
	T14P1.13	Alanine-tRNA ligase. (272 aa)
	T20H2.11	DNA ligase-like protein. (285 aa)
	PRN1	Pirin-1; Involved in abscisic acid signal transduction. Plays a role in seed germination and early seedling development. Involved in the blue light (BL) signaling; Belongs to the pirin family. (287 aa)
	ABIL2	Protein ABIL2; Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex (By similarity); Belongs to the ABI family. (312 aa)
	VOZ2	Transcription factor VOZ2; Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ1 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Binds as a dimer to the palindromic sequence 5'-GCGTNNNNNNNACGC-3'. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome- dependent manner. (450 aa)

Your Current Organism:

Arabidopsis thaliana

NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABIL2	PRN1	Q9M3A3	Q9LX49	Protein ABIL2; Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex (By similarity); Belongs to the ABI family.	Pirin-1; Involved in abscisic acid signal transduction. Plays a role in seed germination and early seedling development. Involved in the blue light (BL) signaling; Belongs to the pirin family.	0.638
ABIL2	SYT5	Q9M3A3	Q8L706	Protein ABIL2; Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex (By similarity); Belongs to the ABI family.	Synaptotagmin-5; May be involved in membrane trafficking.	0.791
ABIL2	T14P1.13	Q9M3A3	Q94AZ5	Protein ABIL2; Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex (By similarity); Belongs to the ABI family.	Alanine-tRNA ligase.	0.718
ABIL2	T20H2.11	Q9M3A3	Q9LNT6	Protein ABIL2; Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex (By similarity); Belongs to the ABI family.	DNA ligase-like protein.	0.823
ABIL2	VOZ2	Q9M3A3	Q9SLB9	Protein ABIL2; Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex (By similarity); Belongs to the ABI family.	Transcription factor VOZ2; Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ1 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Binds as a dimer to the palindromic sequence 5'-GCGTNNNNNNNACGC-3'. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome- dependent manner.	0.590
PRN1	ABIL2	Q9LX49	Q9M3A3	Pirin-1; Involved in abscisic acid signal transduction. Plays a role in seed germination and early seedling development. Involved in the blue light (BL) signaling; Belongs to the pirin family.	Protein ABIL2; Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex (By similarity); Belongs to the ABI family.	0.638
PRN1	SYT5	Q9LX49	Q8L706	Pirin-1; Involved in abscisic acid signal transduction. Plays a role in seed germination and early seedling development. Involved in the blue light (BL) signaling; Belongs to the pirin family.	Synaptotagmin-5; May be involved in membrane trafficking.	0.574
PRN1	T20H2.11	Q9LX49	Q9LNT6	Pirin-1; Involved in abscisic acid signal transduction. Plays a role in seed germination and early seedling development. Involved in the blue light (BL) signaling; Belongs to the pirin family.	DNA ligase-like protein.	0.739
PRN1	VOZ2	Q9LX49	Q9SLB9	Pirin-1; Involved in abscisic acid signal transduction. Plays a role in seed germination and early seedling development. Involved in the blue light (BL) signaling; Belongs to the pirin family.	Transcription factor VOZ2; Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ1 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Binds as a dimer to the palindromic sequence 5'-GCGTNNNNNNNACGC-3'. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome- dependent manner.	0.790
SYT5	ABIL2	Q8L706	Q9M3A3	Synaptotagmin-5; May be involved in membrane trafficking.	Protein ABIL2; Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex (By similarity); Belongs to the ABI family.	0.791
SYT5	PRN1	Q8L706	Q9LX49	Synaptotagmin-5; May be involved in membrane trafficking.	Pirin-1; Involved in abscisic acid signal transduction. Plays a role in seed germination and early seedling development. Involved in the blue light (BL) signaling; Belongs to the pirin family.	0.574
SYT5	T14P1.13	Q8L706	Q94AZ5	Synaptotagmin-5; May be involved in membrane trafficking.	Alanine-tRNA ligase.	0.660
SYT5	T20H2.11	Q8L706	Q9LNT6	Synaptotagmin-5; May be involved in membrane trafficking.	DNA ligase-like protein.	0.801
SYT5	VOZ2	Q8L706	Q9SLB9	Synaptotagmin-5; May be involved in membrane trafficking.	Transcription factor VOZ2; Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ1 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Binds as a dimer to the palindromic sequence 5'-GCGTNNNNNNNACGC-3'. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome- dependent manner.	0.543
T14P1.13	ABIL2	Q94AZ5	Q9M3A3	Alanine-tRNA ligase.	Protein ABIL2; Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex (By similarity); Belongs to the ABI family.	0.718
T14P1.13	SYT5	Q94AZ5	Q8L706	Alanine-tRNA ligase.	Synaptotagmin-5; May be involved in membrane trafficking.	0.660
T14P1.13	T20H2.11	Q94AZ5	Q9LNT6	Alanine-tRNA ligase.	DNA ligase-like protein.	0.784
T20H2.11	ABIL2	Q9LNT6	Q9M3A3	DNA ligase-like protein.	Protein ABIL2; Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the Arp2/3 complex (By similarity); Belongs to the ABI family.	0.823
T20H2.11	PRN1	Q9LNT6	Q9LX49	DNA ligase-like protein.	Pirin-1; Involved in abscisic acid signal transduction. Plays a role in seed germination and early seedling development. Involved in the blue light (BL) signaling; Belongs to the pirin family.	0.739
T20H2.11	SYT5	Q9LNT6	Q8L706	DNA ligase-like protein.	Synaptotagmin-5; May be involved in membrane trafficking.	0.801