Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ATH1 | RFI2 | P48731 | O82239 | Homeobox protein ATH1; Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). Belongs to the TALE/BELL homeobox family. | E3 ubiquitin-protein ligase RFI2; Mediates phytochrome (phyA and phyB)-controlled seedling deetiolation responses such as hypocotyl elongation in response to red and far-red light. Required for light-induced expression of LHCB3 and CHALCONE SYNTHASE (CHS). Regulates negatively CONSTANS (CO) and FLOWERING LOCUS T (FT) expression and photoperiodic flowering. | 0.784 |
| Dl4875c | F4I1.22 | Q8L7G9 | Q6NLR3 | SBP (S-ribonuclease binding protein) family protein. | RING/U-box superfamily protein. | 0.806 |
| Dl4875c | RFI2 | Q8L7G9 | O82239 | SBP (S-ribonuclease binding protein) family protein. | E3 ubiquitin-protein ligase RFI2; Mediates phytochrome (phyA and phyB)-controlled seedling deetiolation responses such as hypocotyl elongation in response to red and far-red light. Required for light-induced expression of LHCB3 and CHALCONE SYNTHASE (CHS). Regulates negatively CONSTANS (CO) and FLOWERING LOCUS T (FT) expression and photoperiodic flowering. | 0.758 |
| F4I1.22 | Dl4875c | Q6NLR3 | Q8L7G9 | RING/U-box superfamily protein. | SBP (S-ribonuclease binding protein) family protein. | 0.806 |
| F4I1.22 | RFI2 | Q6NLR3 | O82239 | RING/U-box superfamily protein. | E3 ubiquitin-protein ligase RFI2; Mediates phytochrome (phyA and phyB)-controlled seedling deetiolation responses such as hypocotyl elongation in response to red and far-red light. Required for light-induced expression of LHCB3 and CHALCONE SYNTHASE (CHS). Regulates negatively CONSTANS (CO) and FLOWERING LOCUS T (FT) expression and photoperiodic flowering. | 0.792 |
| NAC035 | RFI2 | Q9ZVP8 | O82239 | NAC domain-containing protein 35; Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. | E3 ubiquitin-protein ligase RFI2; Mediates phytochrome (phyA and phyB)-controlled seedling deetiolation responses such as hypocotyl elongation in response to red and far-red light. Required for light-induced expression of LHCB3 and CHALCONE SYNTHASE (CHS). Regulates negatively CONSTANS (CO) and FLOWERING LOCUS T (FT) expression and photoperiodic flowering. | 0.598 |
| NAC035 | T16F16.23 | Q9ZVP8 | Q9ZVP9 | NAC domain-containing protein 35; Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. | Transmembrane protein. | 0.827 |
| RFI2 | ATH1 | O82239 | P48731 | E3 ubiquitin-protein ligase RFI2; Mediates phytochrome (phyA and phyB)-controlled seedling deetiolation responses such as hypocotyl elongation in response to red and far-red light. Required for light-induced expression of LHCB3 and CHALCONE SYNTHASE (CHS). Regulates negatively CONSTANS (CO) and FLOWERING LOCUS T (FT) expression and photoperiodic flowering. | Homeobox protein ATH1; Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). Belongs to the TALE/BELL homeobox family. | 0.784 |
| RFI2 | Dl4875c | O82239 | Q8L7G9 | E3 ubiquitin-protein ligase RFI2; Mediates phytochrome (phyA and phyB)-controlled seedling deetiolation responses such as hypocotyl elongation in response to red and far-red light. Required for light-induced expression of LHCB3 and CHALCONE SYNTHASE (CHS). Regulates negatively CONSTANS (CO) and FLOWERING LOCUS T (FT) expression and photoperiodic flowering. | SBP (S-ribonuclease binding protein) family protein. | 0.758 |
| RFI2 | F4I1.22 | O82239 | Q6NLR3 | E3 ubiquitin-protein ligase RFI2; Mediates phytochrome (phyA and phyB)-controlled seedling deetiolation responses such as hypocotyl elongation in response to red and far-red light. Required for light-induced expression of LHCB3 and CHALCONE SYNTHASE (CHS). Regulates negatively CONSTANS (CO) and FLOWERING LOCUS T (FT) expression and photoperiodic flowering. | RING/U-box superfamily protein. | 0.792 |
| RFI2 | NAC035 | O82239 | Q9ZVP8 | E3 ubiquitin-protein ligase RFI2; Mediates phytochrome (phyA and phyB)-controlled seedling deetiolation responses such as hypocotyl elongation in response to red and far-red light. Required for light-induced expression of LHCB3 and CHALCONE SYNTHASE (CHS). Regulates negatively CONSTANS (CO) and FLOWERING LOCUS T (FT) expression and photoperiodic flowering. | NAC domain-containing protein 35; Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. | 0.598 |
| RFI2 | T16F16.23 | O82239 | Q9ZVP9 | E3 ubiquitin-protein ligase RFI2; Mediates phytochrome (phyA and phyB)-controlled seedling deetiolation responses such as hypocotyl elongation in response to red and far-red light. Required for light-induced expression of LHCB3 and CHALCONE SYNTHASE (CHS). Regulates negatively CONSTANS (CO) and FLOWERING LOCUS T (FT) expression and photoperiodic flowering. | Transmembrane protein. | 0.739 |
| T16F16.23 | NAC035 | Q9ZVP9 | Q9ZVP8 | Transmembrane protein. | NAC domain-containing protein 35; Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. | 0.827 |
| T16F16.23 | RFI2 | Q9ZVP9 | O82239 | Transmembrane protein. | E3 ubiquitin-protein ligase RFI2; Mediates phytochrome (phyA and phyB)-controlled seedling deetiolation responses such as hypocotyl elongation in response to red and far-red light. Required for light-induced expression of LHCB3 and CHALCONE SYNTHASE (CHS). Regulates negatively CONSTANS (CO) and FLOWERING LOCUS T (FT) expression and photoperiodic flowering. | 0.739 |