STRINGSTRING
dl4305c-2 dl4305c-2 PUB45 PUB45 PP2A14 PP2A14 K17E12.4 K17E12.4 F14L17.10 F14L17.10
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
dl4305c-2Probable aspartyl protease At4g16563; Belongs to the peptidase A1 family. (499 aa)
PUB45U-box domain-containing protein 45; Functions as an E3 ubiquitin ligase. (768 aa)
PP2A14F-box protein PP2-A14; Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. (291 aa)
K17E12.4Kelch repeat-containing protein At3g27220. (426 aa)
F14L17.10Galactose oxidase/kelch repeat superfamily protein. (441 aa)
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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