10 items (Arabidopsis thaliana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1P8B2J0	Serine/Threonine-kinase. (304 aa)
	MGN6.19	Nucleic acid-binding protein. (351 aa)
	T20H2.28	Cytomatrix protein-like protein. (342 aa)
	T31P16.50	ENTH/VHS family protein. (469 aa)
	MAJ23.70	Centromere protein O. (312 aa)
	MQN23.12	ENTH/VHS family protein. (439 aa)
	ICR3	Interactor of constitutive active ROPs 3; Acts as a scaffold, mediating interaction of ROPs with different proteins. (564 aa)
	MUL3.6	Nucleolar/coiled-body phosphoprotein. (330 aa)
	MGO3.1	Uncharacterized protein. (292 aa)
	F20D21.2	Protein BIG GRAIN 1-like B; Involved in auxin transport. Regulator of the auxin signaling pathway; Belongs to the BIG GRAIN 1 (BG1) plant protein family. (366 aa)

Your Current Organism:

Arabidopsis thaliana

NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1P8B2J0	F20D21.2	A0A1P8B2J0	Q9SLL2	Serine/Threonine-kinase.	Protein BIG GRAIN 1-like B; Involved in auxin transport. Regulator of the auxin signaling pathway; Belongs to the BIG GRAIN 1 (BG1) plant protein family.	0.899
A0A1P8B2J0	ICR3	A0A1P8B2J0	Q9LSS5	Serine/Threonine-kinase.	Interactor of constitutive active ROPs 3; Acts as a scaffold, mediating interaction of ROPs with different proteins.	0.895
A0A1P8B2J0	MAJ23.70	A0A1P8B2J0	Q8GUP4	Serine/Threonine-kinase.	Centromere protein O.	0.899
A0A1P8B2J0	MGN6.19	A0A1P8B2J0	F4JXC2	Serine/Threonine-kinase.	Nucleic acid-binding protein.	0.908
A0A1P8B2J0	MGO3.1	A0A1P8B2J0	Q9LVH1	Serine/Threonine-kinase.	Uncharacterized protein.	0.897
A0A1P8B2J0	MQN23.12	A0A1P8B2J0	Q9FJP7	Serine/Threonine-kinase.	ENTH/VHS family protein.	0.899
A0A1P8B2J0	MUL3.6	A0A1P8B2J0	Q9LU74	Serine/Threonine-kinase.	Nucleolar/coiled-body phosphoprotein.	0.899
A0A1P8B2J0	T20H2.28	A0A1P8B2J0	Q84JE5	Serine/Threonine-kinase.	Cytomatrix protein-like protein.	0.908
A0A1P8B2J0	T31P16.50	A0A1P8B2J0	Q8GUK8	Serine/Threonine-kinase.	ENTH/VHS family protein.	0.899
F20D21.2	A0A1P8B2J0	Q9SLL2	A0A1P8B2J0	Protein BIG GRAIN 1-like B; Involved in auxin transport. Regulator of the auxin signaling pathway; Belongs to the BIG GRAIN 1 (BG1) plant protein family.	Serine/Threonine-kinase.	0.899
F20D21.2	ICR3	Q9SLL2	Q9LSS5	Protein BIG GRAIN 1-like B; Involved in auxin transport. Regulator of the auxin signaling pathway; Belongs to the BIG GRAIN 1 (BG1) plant protein family.	Interactor of constitutive active ROPs 3; Acts as a scaffold, mediating interaction of ROPs with different proteins.	0.898
F20D21.2	MAJ23.70	Q9SLL2	Q8GUP4	Protein BIG GRAIN 1-like B; Involved in auxin transport. Regulator of the auxin signaling pathway; Belongs to the BIG GRAIN 1 (BG1) plant protein family.	Centromere protein O.	0.899
F20D21.2	MGN6.19	Q9SLL2	F4JXC2	Protein BIG GRAIN 1-like B; Involved in auxin transport. Regulator of the auxin signaling pathway; Belongs to the BIG GRAIN 1 (BG1) plant protein family.	Nucleic acid-binding protein.	0.899
F20D21.2	MGO3.1	Q9SLL2	Q9LVH1	Protein BIG GRAIN 1-like B; Involved in auxin transport. Regulator of the auxin signaling pathway; Belongs to the BIG GRAIN 1 (BG1) plant protein family.	Uncharacterized protein.	0.897
F20D21.2	MQN23.12	Q9SLL2	Q9FJP7	Protein BIG GRAIN 1-like B; Involved in auxin transport. Regulator of the auxin signaling pathway; Belongs to the BIG GRAIN 1 (BG1) plant protein family.	ENTH/VHS family protein.	0.899
F20D21.2	MUL3.6	Q9SLL2	Q9LU74	Protein BIG GRAIN 1-like B; Involved in auxin transport. Regulator of the auxin signaling pathway; Belongs to the BIG GRAIN 1 (BG1) plant protein family.	Nucleolar/coiled-body phosphoprotein.	0.899
F20D21.2	T20H2.28	Q9SLL2	Q84JE5	Protein BIG GRAIN 1-like B; Involved in auxin transport. Regulator of the auxin signaling pathway; Belongs to the BIG GRAIN 1 (BG1) plant protein family.	Cytomatrix protein-like protein.	0.899
F20D21.2	T31P16.50	Q9SLL2	Q8GUK8	Protein BIG GRAIN 1-like B; Involved in auxin transport. Regulator of the auxin signaling pathway; Belongs to the BIG GRAIN 1 (BG1) plant protein family.	ENTH/VHS family protein.	0.899
ICR3	A0A1P8B2J0	Q9LSS5	A0A1P8B2J0	Interactor of constitutive active ROPs 3; Acts as a scaffold, mediating interaction of ROPs with different proteins.	Serine/Threonine-kinase.	0.895
ICR3	F20D21.2	Q9LSS5	Q9SLL2	Interactor of constitutive active ROPs 3; Acts as a scaffold, mediating interaction of ROPs with different proteins.	Protein BIG GRAIN 1-like B; Involved in auxin transport. Regulator of the auxin signaling pathway; Belongs to the BIG GRAIN 1 (BG1) plant protein family.	0.898