STRINGSTRING
EMB2076 EMB2076 F14P3.6 F14P3.6 T5C23.110 T5C23.110 T5E8_250 T5E8_250 PCMP-E16 PCMP-E16
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
EMB2076Pentatricopeptide repeat-containing protein At3g29290; Belongs to the PPR family. P subfamily. (540 aa)
F14P3.6E3 ubiquitin-protein ligase At3g02290; Mediates E2-dependent protein ubiquitination. (231 aa)
T5C23.110E3 ubiquitin-protein ligase At4g11680; Mediates E2-dependent protein ubiquitination in vitro. (390 aa)
T5E8_250Pentatricopeptide repeat-containing protein At5g09450, mitochondrial. (409 aa)
PCMP-E16Pentatricopeptide repeat-containing protein At5g39350; Belongs to the PPR family. PCMP-E subfamily. (677 aa)
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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