(15 nodes) Mixed, incl. Zinc finger protein MBS1/2-like, and CCT motif network (Arabidopsis thaliana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6D8.5	Alpha/beta-Hydrolases superfamily protein. (255 aa)
	CIL	CCT motif family protein. (409 aa)
	F4I9G9_ARATH	Cysteine proteinase superfamily protein. (297 aa)
	F4JN57_ARATH	DDE family endonuclease. (527 aa)
	T24G3.80	AT5g28150/T24G3_80. (289 aa)
	F18O22.160	CCT motif family protein. (339 aa)
	MED24	Probable glycosyltransferase At5g03795; May be involved in cell wall biosynthesis; Belongs to the glycosyltransferase 47 family. (518 aa)
	SPT	Transcription factor SPATULA; Transcription factor that plays a role in floral organogenesis. Promotes the growth of carpel margins and of pollen tract tissues derived from them. (373 aa)
	ASML2	Activator of sporamin LUC 2. (251 aa)
	GT-4	Trihelix transcription factor GT-4; Probable transcription factor that binds specific DNA sequence. (372 aa)
	OTU10	OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 10; Hydrolase that can remove conjugated ubiquitin from proteins in vitro and may therefore play an important regulatory role at the level of protein turnover by preventing degradation (Probable). Cysteine protease with a preference for 'Lys-63' over 'Lys-48' over 'Met-1' -linked ubiquitin (UB) tetramers as substrates. Cleaves also RUB-GST fusion. Belongs to the peptidase C85 family. (356 aa)
	MBS1	Protein METHYLENE BLUE SENSITIVITY 1; Required for acclimation to reactive oxygen species (ROS) responses downstream of beta-cyclocitral (beta-cc) or mediated by dihydroactinidiolide, including singlet oxygen 1O(2) detoxification reactions, especially upon light-mediated photooxidative stress, and leading to programmed cell death. Prevents leaf senescence. Involved in cold acclimation. (105 aa)
	MYB100	Putative MYB family transcription factor. (234 aa)
	T28P16.10	Coiled-coil protein. (199 aa)
	T2K10.11	Serine/threonine-protein kinase WNK (With No Lysine)-like protein. (386 aa)

Your Current Organism:

Arabidopsis thaliana

NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASML2	CIL	Q9LDL9	C0SVJ8	Activator of sporamin LUC 2.	CCT motif family protein.	0.599
ASML2	F18O22.160	Q9LDL9	Q949T9	Activator of sporamin LUC 2.	CCT motif family protein.	0.881
ASML2	F6D8.5	Q9LDL9	A0A1P8AQT5	Activator of sporamin LUC 2.	Alpha/beta-Hydrolases superfamily protein.	0.778
ASML2	MED24	Q9LDL9	Q9FFN2	Activator of sporamin LUC 2.	Probable glycosyltransferase At5g03795; May be involved in cell wall biosynthesis; Belongs to the glycosyltransferase 47 family.	0.695
ASML2	T24G3.80	Q9LDL9	Q8RX84	Activator of sporamin LUC 2.	AT5g28150/T24G3_80.	0.573
ASML2	T28P16.10	Q9LDL9	Q9SIC8	Activator of sporamin LUC 2.	Coiled-coil protein.	0.573
ASML2	T2K10.11	Q9LDL9	Q9ZUI7	Activator of sporamin LUC 2.	Serine/threonine-protein kinase WNK (With No Lysine)-like protein.	0.772
CIL	ASML2	C0SVJ8	Q9LDL9	CCT motif family protein.	Activator of sporamin LUC 2.	0.599
F18O22.160	ASML2	Q949T9	Q9LDL9	CCT motif family protein.	Activator of sporamin LUC 2.	0.881
F4I9G9_ARATH	MED24	F4I9G9	Q9FFN2	Cysteine proteinase superfamily protein.	Probable glycosyltransferase At5g03795; May be involved in cell wall biosynthesis; Belongs to the glycosyltransferase 47 family.	0.913
F4I9G9_ARATH	OTU10	F4I9G9	Q9LZF7	Cysteine proteinase superfamily protein.	OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 10; Hydrolase that can remove conjugated ubiquitin from proteins in vitro and may therefore play an important regulatory role at the level of protein turnover by preventing degradation (Probable). Cysteine protease with a preference for 'Lys-63' over 'Lys-48' over 'Met-1' -linked ubiquitin (UB) tetramers as substrates. Cleaves also RUB-GST fusion. Belongs to the peptidase C85 family.	0.881
F4JN57_ARATH	MBS1	F4JN57	Q9M8S0	DDE family endonuclease.	Protein METHYLENE BLUE SENSITIVITY 1; Required for acclimation to reactive oxygen species (ROS) responses downstream of beta-cyclocitral (beta-cc) or mediated by dihydroactinidiolide, including singlet oxygen 1O(2) detoxification reactions, especially upon light-mediated photooxidative stress, and leading to programmed cell death. Prevents leaf senescence. Involved in cold acclimation.	0.636
F6D8.5	ASML2	A0A1P8AQT5	Q9LDL9	Alpha/beta-Hydrolases superfamily protein.	Activator of sporamin LUC 2.	0.778
F6D8.5	MED24	A0A1P8AQT5	Q9FFN2	Alpha/beta-Hydrolases superfamily protein.	Probable glycosyltransferase At5g03795; May be involved in cell wall biosynthesis; Belongs to the glycosyltransferase 47 family.	0.801
F6D8.5	T2K10.11	A0A1P8AQT5	Q9ZUI7	Alpha/beta-Hydrolases superfamily protein.	Serine/threonine-protein kinase WNK (With No Lysine)-like protein.	0.885
GT-4	MBS1	Q9LU92	Q9M8S0	Trihelix transcription factor GT-4; Probable transcription factor that binds specific DNA sequence.	Protein METHYLENE BLUE SENSITIVITY 1; Required for acclimation to reactive oxygen species (ROS) responses downstream of beta-cyclocitral (beta-cc) or mediated by dihydroactinidiolide, including singlet oxygen 1O(2) detoxification reactions, especially upon light-mediated photooxidative stress, and leading to programmed cell death. Prevents leaf senescence. Involved in cold acclimation.	0.790
MBS1	F4JN57_ARATH	Q9M8S0	F4JN57	Protein METHYLENE BLUE SENSITIVITY 1; Required for acclimation to reactive oxygen species (ROS) responses downstream of beta-cyclocitral (beta-cc) or mediated by dihydroactinidiolide, including singlet oxygen 1O(2) detoxification reactions, especially upon light-mediated photooxidative stress, and leading to programmed cell death. Prevents leaf senescence. Involved in cold acclimation.	DDE family endonuclease.	0.636
MBS1	GT-4	Q9M8S0	Q9LU92	Protein METHYLENE BLUE SENSITIVITY 1; Required for acclimation to reactive oxygen species (ROS) responses downstream of beta-cyclocitral (beta-cc) or mediated by dihydroactinidiolide, including singlet oxygen 1O(2) detoxification reactions, especially upon light-mediated photooxidative stress, and leading to programmed cell death. Prevents leaf senescence. Involved in cold acclimation.	Trihelix transcription factor GT-4; Probable transcription factor that binds specific DNA sequence.	0.790
MBS1	MYB100	Q9M8S0	Q9S754	Protein METHYLENE BLUE SENSITIVITY 1; Required for acclimation to reactive oxygen species (ROS) responses downstream of beta-cyclocitral (beta-cc) or mediated by dihydroactinidiolide, including singlet oxygen 1O(2) detoxification reactions, especially upon light-mediated photooxidative stress, and leading to programmed cell death. Prevents leaf senescence. Involved in cold acclimation.	Putative MYB family transcription factor.	0.473
MBS1	T24G3.80	Q9M8S0	Q8RX84	Protein METHYLENE BLUE SENSITIVITY 1; Required for acclimation to reactive oxygen species (ROS) responses downstream of beta-cyclocitral (beta-cc) or mediated by dihydroactinidiolide, including singlet oxygen 1O(2) detoxification reactions, especially upon light-mediated photooxidative stress, and leading to programmed cell death. Prevents leaf senescence. Involved in cold acclimation.	AT5g28150/T24G3_80.	0.757