STRINGSTRING
F24B9.6 F24B9.6 RPS7A RPS7A F5E6.14 F5E6.14 FIB1 FIB1 FIB3 FIB3 K1F13.21 K1F13.21 MUA22.5 MUA22.5 ZFWD2 ZFWD2 ZFWD1 ZFWD1 F8L15.150 F8L15.150 TOZ TOZ F18K10.11 F18K10.11 Q9LTV0_ARATH Q9LTV0_ARATH Q9LVF2_ARATH Q9LVF2_ARATH F26K10.80 F26K10.80 YAO YAO F24I3.80 F24I3.80 F24I3.70 F24I3.70 EDA14 EDA14 RPS7B RPS7B NOP5-2 NOP5-2 T12P18.20 T12P18.20 NOP56 NOP56 F4N2.4 F4N2.4 F6I18.5 F6I18.5 T1K7.10 T1K7.10 NOC4 NOC4 F4IZ10_ARATH F4IZ10_ARATH RRP5 RRP5 T14P8.20 T14P8.20 T1P17.190 T1P17.190 F5O24.50 F5O24.50 MLF18.16 MLF18.16 MAH20.16 MAH20.16 NOP5-3 NOP5-3 NOP5-1 NOP5-1 T3F17.12 T3F17.12 T12P18.17 T12P18.17 EMB2271 EMB2271 F14F8.130 F14F8.130 NOF1 NOF1 EMB2777 EMB2777 MEE21 MEE21 Q8LCC7_ARATH Q8LCC7_ARATH RPS7C RPS7C PWP2 PWP2 F20O9.130 F20O9.130 T1J1.5 T1J1.5 FIB2 FIB2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
F24B9.6Sas10/Utp3/C1D family. (312 aa)
RPS7A40S ribosomal protein S7-1; Belongs to the eukaryotic ribosomal protein eS7 family. (191 aa)
F5E6.14Uncharacterized protein At3g06530; Involved in nucleolar processing of pre-18S ribosomal RNA. Involved in ribosome biosynthesis (By similarity). (2197 aa)
FIB1rRNA 2'-O-methyltransferase fibrillarin 1; S-adenosyl-L-methionine-dependent methyltransferase that has the ability to methylate both RNAs and proteins (Probable). Involved in pre-rRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in pre-ribosomal RNA (Probable). Site specificity is provided by a guide RNA that base pairs with the substrate (Probable). Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA (Probable). Also acts as a protein met [...] (308 aa)
FIB3Putative rRNA 2'-O-methyltransferase fibrillarin 3; S-adenosyl-L-methionine-dependent methyltransferase that has the ability to methylate both RNAs and proteins. Involved in pre-rRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in pre-ribosomal RNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA. Also acts as a protein methyltransferase by mediating methyla [...] (292 aa)
K1F13.21U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (524 aa)
MUA22.5U3 small nucleolar RNA-associated protein 18 homolog; Involved in nucleolar processing of pre-18S ribosomal RNA. (546 aa)
ZFWD2Zinc finger CCCH domain-containing protein 63. (443 aa)
ZFWD1Zinc finger CCCH domain-containing protein 48. (430 aa)
F8L15.150KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (391 aa)
TOZTransducin family protein / WD-40 repeat family protein. (876 aa)
F18K10.11Transducin/WD40 repeat-like superfamily protein. (536 aa)
Q9LTV0_ARATHNOP56-like pre RNA processing ribonucleoprotein. (499 aa)
Q9LVF2_ARATHTransducin family protein / WD-40 repeat family protein. (955 aa)
F26K10.80U3 small nucleolar RNA-associated-like protein. (648 aa)
YAOU3 snoRNP-associated protein-like YAO; Component of a nucleolar small nuclear ribonucleoprotein particle (snoRNP) thought to participate in the processing and modification of pre-ribosomal RNA (By similarity). Essential for embryogenesis. Plays a critical role in embryo sac development and gametic cell fate. Required for the correct positioning of the first division plane of zygote. May function during early embryogenesis. (504 aa)
F24I3.80Nucleolar essential protein-like protein. (298 aa)
F24I3.70Embryo sac development arrest 7. (711 aa)
EDA14Probable U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the UTP11 family. (228 aa)
RPS7B40S ribosomal protein S7-2; Belongs to the eukaryotic ribosomal protein eS7 family. (191 aa)
NOP5-2Probable nucleolar protein 5-2; Required for 60S ribosomal subunit biogenesis; Belongs to the NOP5/NOP56 family. (533 aa)
T12P18.20Putative U3 small nucleolar ribonucleoprotein protein; 73469-75667. (294 aa)
NOP56NOP56-like pre RNA processing ribonucleoprotein. (522 aa)
F4N2.4Nucleolar-like protein. (904 aa)
F6I18.5ARM repeat superfamily protein. (2624 aa)
T1K7.10PIN domain-like family protein. (178 aa)
NOC4Protein NUCLEOLAR COMPLEX ASSOCIATED 4; Essential protein required during embryogenesis. Involved in nucleolar processing of ribosomal RNA (rRNA) 40S and 90S ribosomal subunits and ribosome assembly; early in ribosome biogenesis, especially required during the maturation of 5.8S rRNA. Has a role in the nuclear export of 40S pre-ribosomal subunit to the cytoplasm (By similarity). (577 aa)
F4IZ10_ARATHSomething about silencing protein. (174 aa)
RRP5rRNA biogenesis protein RRP5; Involved in the biogenesis of ribosomal RNA (rRNA). Required for the formation of 5.8S rRNA. Required for normal development of female gametophytes. (1920 aa)
T14P8.20U3 ribonucleoprotein (Utp) family protein. (855 aa)
T1P17.190Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (183 aa)
F5O24.50Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (160 aa)
MLF18.16U3 small nucleolar RNA-associated protein. (153 aa)
MAH20.16U3 ribonucleoprotein (Utp) family protein. (845 aa)
NOP5-3Putative nucleolar protein 5-3; Required for 60S ribosomal subunit biogenesis; Belongs to the NOP5/NOP56 family. (450 aa)
NOP5-1Probable nucleolar protein 5-1; Required for 60S ribosomal subunit biogenesis; Belongs to the NOP5/NOP56 family. (533 aa)
T3F17.12PIN domain-like family protein. (196 aa)
T12P18.17Nucleolar protein. (1053 aa)
EMB2271U3 snoRNP-associated protein-like EMB2271; Component of a nucleolar small nuclear ribonucleoprotein particle (snoRNP) thought to participate in the processing and modification of pre-ribosomal RNA (By similarity). Essential for embryogenesis (By similarity). May function during late embryogenesis. (479 aa)
F14F8.130Alpha-L RNA-binding motif/Ribosomal protein S4 family protein. (182 aa)
NOF1U3 small nucleolar RNA-associated protein. (754 aa)
EMB2777Sas10/U3 ribonucleoprotein (Utp) family protein. (654 aa)
MEE21PIN domain-like family protein. (281 aa)
Q8LCC7_ARATHRibonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
RPS7C40S ribosomal protein S7-3; Belongs to the eukaryotic ribosomal protein eS7 family. (190 aa)
PWP2Periodic tryptophan protein 2; Involved in nucleolar processing of pre-18S ribosomal RNA. Plays a role early in ribosome biogenesis, especially in the maturation of 5.8S rRNA. Required for guard cell functions. (900 aa)
F20O9.130WD repeat and SOF domain-containing protein 1. (452 aa)
T1J1.5Transducin family protein / WD-40 repeat family protein. (910 aa)
FIB2rRNA 2'-O-methyltransferase fibrillarin 2; S-adenosyl-L-methionine-dependent methyltransferase that has the ability to methylate both RNAs and proteins (Probable). Involved in pre-rRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in pre-ribosomal RNA (Probable). Site specificity is provided by a guide RNA that base pairs with the substrate (Probable). Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA (Probable). Also acts as a protein met [...] (320 aa)
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.