STRINGSTRING
MSF3.19 MSF3.19 REM22-2 REM22-2 F15L12 F15L12 MGO3.11 MGO3.11 FUS3 FUS3 REM23 REM23 NGA2 NGA2 REM21 REM21 T20M3.21 T20M3.21 NGA3 NGA3 REM4 REM4 REM5 REM5 T9C5.200 T9C5.200 T28P16.9 T28P16.9 F7D8.24 F7D8.24 ARF10 ARF10 REM22 REM22 F14I3.16 F14I3.16 ARF42 ARF42 T30F21.3 T30F21.3 F10M10.170 F10M10.170 ARF9 ARF9 F13F21.9 F13F21.9 REM19 REM19 ARF12 ARF12 T10O24.6 T10O24.6 ARF11 ARF11 F4C21.9 F4C21.9 F4C21.8 F4C21.8 T15B16.18 T15B16.18 ARF6 ARF6 ARF4 ARF4 RAV1 RAV1 A0A178WKG1 A0A178WKG1 A0A1P8AY78 A0A1P8AY78 A0A1P8B795 A0A1P8B795 F27A10.1 F27A10.1 F18O9.70 F18O9.70 REM15.15 REM15.15 T1B8.29 T1B8.29 ARF3 ARF3 VAL3 VAL3 REM9 REM9 REM6 REM6 NGA4 NGA4 NGA1 NGA1 REM11 REM11 REM12 REM12 REM13 REM13 REM10 REM10 RAV2 RAV2 ARF7 ARF7 ARF5 ARF5 ABI3 ABI3 MVI11 MVI11 F1I21 F1I21 T14C9.20 T14C9.20 F28L1.16 F28L1.16 LEC2 LEC2 MJP23 MJP23 F2P16 F2P16 REM2 REM2 F7H1.23 F7H1.23 VAL2 VAL2 T4C15.2 T4C15.2 T20M3.20 T20M3.20 T14C9.1 T14C9.1 REM1 REM1 K13E13.7 K13E13.7 REM17 REM17 ARF17 ARF17 F7G19.27 F7G19.27 ARF31 ARF31 REM14 REM14 REM7 REM7 REM8 REM8 VRN1 VRN1 ARF1-2 ARF1-2 REM20 REM20 ARF70 ARF70 ARF19 ARF19 REM16 REM16 ARF32 ARF32 F25P17.1 F25P17.1 REM3 REM3 VAL1 VAL1 ARF16 ARF16 ARF2 ARF2 ARF18 ARF18 F23H24.5 F23H24.5 TEM1 TEM1 F17J6.20 F17J6.20 T12O21.7 T12O21.7 ARF20 ARF20 ARF22 ARF22 ARF21 ARF21 MIK22.1 MIK22.1 MBB18.3 MBB18.3 MBB18.2 MBB18.2 K8A10.5 K8A10.5 ARF8 ARF8 MGO3.2 MGO3.2 MCK7.15 MCK7.15 MRI1.8 MRI1.8 VDD VDD MRG7.5 MRG7.5 MZF18.7 MZF18.7 MJB21.7 MJB21.7 DPA4 DPA4 ARF13 ARF13 F19K19.7 F19K19.7 T19N8.16 T19N8.16 F2D10.9 F2D10.9 ARF23 ARF23 ARF15 ARF15 ARF14 ARF14 K7P8.14 K7P8.14 ARF14-2 ARF14-2 MJL12.14 MJL12.14
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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MSF3.19Putative B3 domain-containing protein At2g18810. (234 aa)
REM22-2B3 domain-containing protein At3g17010. (302 aa)
F15L12B3 domain-containing protein At5g60142. (346 aa)
MGO3.11B3 domain-containing protein At5g60130. (326 aa)
FUS3B3 domain-containing transcription factor FUS3; Transcription regulator involved in gene regulation during late embryogenesis. Its expression to the epidermis is sufficient to control foliar organ identity by regulating positively the synthesis abscisic acid (ABA) and negatively gibberellin production. Negatively regulates TTG1 in the embryo. Positively regulates the abundance of the ABI3 protein in the seed. Cooperates with KIN10 to regulate developmental phase transitions and lateral organ development and act both as positive regulators of abscisic acid (ABA) signaling during germination. (313 aa)
REM23B3 domain-containing protein REM23. (308 aa)
NGA2B3 domain-containing transcription factor NGA2; Regulates lateral organ growth. Functionally redundant with NGA1, NGA3 and NGA4. (299 aa)
REM21B3 domain-containing protein REM21. (330 aa)
T20M3.21B3 domain-containing protein At1g05930. (318 aa)
NGA3B3 domain-containing transcription factor NGA3; Regulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. (358 aa)
REM4Putative B3 domain-containing protein REM4. (512 aa)
REM5B3 domain-containing protein REM5. (352 aa)
T9C5.200Putative B3 domain-containing protein At3g49610. (334 aa)
T28P16.9B3 domain-containing protein At2g31420. (209 aa)
F7D8.24Putative B3 domain-containing protein At2g21920. (278 aa)
ARF10Auxin response factor 10; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. (693 aa)
REM22B3 domain-containing protein REM22. (276 aa)
F14I3.16Putative B3 domain-containing protein At1g50220. (203 aa)
ARF42B3 domain-containing protein At4g02870. (310 aa)
T30F21.3Putative B3 domain-containing protein At1g78640. (487 aa)
F10M10.170B3 domain-containing protein At4g34400. (397 aa)
ARF9Auxin response factor 9; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. (638 aa)
F13F21.9B3 domain-containing protein At1g49475. (190 aa)
REM19B3 domain-containing protein REM19; Involved in the regulation of vernalization (By similarity). Binds to DNA in vitro in a non-sequence-specific manner. XLG2 promotes the DNA binding activity of RTV1 specifically to promoter regions of FT and SOC1 in vivo and thus leads to the activation of floral integrator genes. (226 aa)
ARF12Auxin response factor 12; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. (593 aa)
T10O24.6B3 domain-containing protein At1g10455. (152 aa)
ARF11Auxin response factor 11; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. (622 aa)
F4C21.9Putative B3 domain-containing protein At4g03170. (250 aa)
F4C21.8Putative B3 domain-containing protein At4g03160. (192 aa)
T15B16.18B3 domain-containing protein At4g01580. (190 aa)
ARF6Auxin response factor 6; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. (935 aa)
ARF4Auxin response factor 4; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. (788 aa)
RAV1AP2/ERF and B3 domain-containing transcription factor RAV1; Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. Belongs to the AP2/ERF transcription factor family. RAV subfamily. (344 aa)
A0A178WKG1B3 domain protein. (243 aa)
A0A1P8AY78Transcriptional factor B3 family protein. (110 aa)
A0A1P8B795Transcriptional factor B3 family protein. (186 aa)
F27A10.1B3 domain-containing protein REM-like 2. (375 aa)
F18O9.70B3 domain-containing protein REM-like 3. (530 aa)
REM15.15Putative B3 domain-containing protein REM15. (528 aa)
T1B8.29B3 domain-containing protein At2g33720. (326 aa)
ARF3Auxin response factor 3; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. (608 aa)
VAL3B3 domain-containing transcription factor VAL3; May be involved in plant development. (713 aa)
REM9B3 domain-containing protein REM9. (461 aa)
REM6B3 domain-containing protein REM6. (493 aa)
NGA4B3 domain-containing transcription factor NGA4; Regulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA3. (333 aa)
NGA1B3 domain-containing transcription factor NGA1; Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. (310 aa)
REM11B3 domain-containing protein REM11. (286 aa)
REM12B3 domain-containing protein REM12. (446 aa)
REM13B3 domain-containing protein REM13. (1045 aa)
REM10B3 domain-containing protein REM10. (555 aa)
RAV2AP2/ERF and B3 domain-containing transcription repressor RAV2; Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. (352 aa)
ARF7Auxin response factor 7; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Act as a transcriptional activator of several tropic stimulus-induced (TSI) genes, including SAUR50. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Required for differential growth responses of aerial tissues. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LB [...] (1164 aa)
ARF5Auxin response factor 5; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. (902 aa)
ABI3B3 domain-containing transcription factor ABI3; Participates in abscisic acid-regulated gene expression during seed development. Regulates the transcription of SGR1 and SGR2 that are involved in leaf and embryo degreening. (720 aa)
MVI11B3 domain-containing protein At3g19184. (277 aa)
F1I21B3 domain-containing protein At1g43171. (112 aa)
T14C9.20B3 domain-containing protein At5g25470. (280 aa)
F28L1.16B3 domain-containing protein At3g06220. (174 aa)
LEC2B3 domain-containing transcription factor LEC2; Transcription regulator that plays a central role in embryo development. Required for the maintenance of suspensor morphology, specification of cotyledon identity, progression through the maturation phase and suppression of premature germination. Ectopic expression is sufficient to promote somatic embryogenesis. (363 aa)
MJP23B3 domain-containing protein At5g54067. (126 aa)
F2P16B3 domain-containing protein At5g26805. (156 aa)
REM2B3 domain-containing protein REM2. (487 aa)
F7H1.23B3 domain-containing protein At2g16210. (291 aa)
VAL2B3 domain-containing transcription repressor VAL2; Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. (780 aa)
T4C15.2B3 domain-containing protein At2g35310. (288 aa)
T20M3.20B3 domain-containing protein At1g05920. (315 aa)
T14C9.1B3 domain-containing protein At5g25475. (282 aa)
REM1B3 domain-containing protein REM1; May play a role in flower development. (517 aa)
K13E13.7B3 domain-containing protein At3g18960. (209 aa)
REM17B3 domain-containing protein REM17. (920 aa)
ARF17Auxin response factor 17; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. (585 aa)
F7G19.27B3 domain-containing protein At1g08985. (101 aa)
ARF31B3 domain-containing protein At2g36080. (244 aa)
REM14B3 domain-containing protein REM14. (490 aa)
REM7B3 domain-containing protein REM7. (251 aa)
REM8B3 domain-containing protein REM8. (462 aa)
VRN1B3 domain-containing transcription factor VRN1; Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. (341 aa)
ARF1-2Auxin response factor 1; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. (665 aa)
REM20B3 domain-containing protein REM20. (286 aa)
ARF70B3 domain-containing protein At2g31720. (313 aa)
ARF19Auxin response factor 19; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF7. (1086 aa)
REM16B3 domain-containing protein REM16. (337 aa)
ARF32B3 domain-containing protein At3g11580. (267 aa)
F25P17.1B3 domain-containing protein REM-like 1. (777 aa)
REM3B3 domain-containing protein REM3. (492 aa)
VAL1B3 domain-containing transcription repressor VAL1; Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL2/HSL1. (790 aa)
ARF16Auxin response factor 16; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. (670 aa)
ARF2Auxin response factor 2; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. (859 aa)
ARF18Auxin response factor 18; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. (602 aa)
F23H24.5AP2/ERF and B3 domain-containing transcription factor At1g51120; Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity); Belongs to the AP2/ERF transcription factor family. RAV subfamily. (352 aa)
TEM1AP2/ERF and B3 domain-containing transcription repressor TEM1; Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'- CACCTG-3 sequences. Functionally redundant with TEM2. Belongs to the AP2/ERF transcription factor family. RAV subfamily. (361 aa)
F17J6.20AP2/ERF and B3 domain-containing transcription factor At1g50680; Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity); Belongs to the AP2/ERF transcription factor family. RAV subfamily. (337 aa)
T12O21.7B3 domain-containing protein At1g32030. (333 aa)
ARF20Auxin response factor 20; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. (590 aa)
ARF22Auxin response factor 22; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. (598 aa)
ARF21Putative auxin response factor 21; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. (606 aa)
MIK22.1Putative B3 domain-containing protein At5g35780. (307 aa)
MBB18.3B3 domain-containing protein At5g38500. (411 aa)
MBB18.2B3 domain-containing protein At5g38490. (364 aa)
K8A10.5Putative B3 domain-containing protein At5g66980. (334 aa)
ARF8Auxin response factor 8; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilizati [...] (811 aa)
MGO3.2B3 domain-containing protein At5g60140. (328 aa)
MCK7.15Putative B3 domain-containing protein At5g58280. (273 aa)
MRI1.8B3 domain-containing protein At5g57720. (300 aa)
VDDB3 domain-containing protein At5g18000. (307 aa)
MRG7.5B3 domain-containing protein At5g18090. (301 aa)
MZF18.7B3 domain-containing protein At5g24050. (349 aa)
MJB21.7B3 domain-containing protein At5g42700. (211 aa)
DPA4B3 domain-containing protein At5g06250. (282 aa)
ARF13Auxin response factor 13; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. (621 aa)
F19K19.7B3 domain-containing protein At1g16640. (134 aa)
T19N8.16Putative B3 domain-containing protein At3g28853. (120 aa)
F2D10.9B3 domain-containing protein At1g20600. (237 aa)
ARF23Putative auxin response factor 23; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. (222 aa)
ARF15Putative auxin response factor 15; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. (593 aa)
ARF14Putative auxin response factor 14; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. (605 aa)
K7P8.14Putative B3 domain-containing protein At3g24850. (359 aa)
ARF14-2AP2/ERF and B3 domain-containing transcription factor ARF14; Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity); Belongs to the AP2/ERF transcription factor family. RAV subfamily. (333 aa)
MJL12.14B3 domain-containing protein At3g25182. (346 aa)
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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